Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01660 ATGCCAGGGTTAACGTGCAACGCTTGCAACGCGGAATTCAAGGATGACACAGAGCAGAAGCTCCATTACAAGTCCGAGTGGCATCGCTACAACCTCAAGCGCAAGGTGGCTGGGGTTCCTGGGGTAACAGAAGCACTATTTCTGGCTAGGCAATCTGTGATTGCTCAAGAGAAAAATAAATTGAATGAGACCCCCATGCTCTATAGCTGTGCTCTTTGTGGAAAGGATTATAAAAGTTCTAAAGCTCATGCTGAGCACCTTAAATCACGTGGTCATATGATCCGGGCCTCTGAAGGAACTAGTCATGCAGATGAGAAGGCAATAATTAAGCCACTTCCAAAACGTGTTGTGAATAGACCTCCTCCTAGAAGAGAGGTAGATAGCTCTGAAAATGAAGAAAGTGAGGATGAATGGGAGGAGGTTGATCCTGAAGATGATTTAGTAGATGGGACTGCAAAGTCCTTGACTGATTTGAATGTGAATGAGCATGGTGAAAATGTTGATATGGATGAAGATGAAGATGAAGATGACAATGATGAGGATGACTTTGAGGAGTTGGACCCCTCAAGTTGCTTTATGTGTGATCAAAAGCACAAAACAATAGAAGACTGCATGGTTCACATGCACAAGCACCATGGATTCTTCATTCCAGATGTTGAGTATTTGAAGGATCCAAAAGGCTTCCTCACCTATCTTGGCCTAAAGGTCCAAAGGGACTACATGTGTTTGTACTGCAATGATAGATGTTATCCGTTCAGCAGCTTGGAAGCAGTCAGGAAACATATGGCAGCTAAAAGCCATTGTAAAGTGCATTTTGGTGATGGTGATGGTGAGGAGGAGGTAGAGTTAGAAGAGTTCTATGACTACAGCAGCAGTTACGTGGATGATCAGGGCAAGCTCATTGTATCTGGTGAAACAGCTAACAATGTAGAACTTGTTGGTGGGTCTGAACTTATAATCACCAGAAAATCTGGTGATAGGATATCAACCAGAACACTTGGTTCCCGTGAATTTTTGCGTTATTATCGTCAGAAACCTCGGCCATCACCAGCAAATAATTTGTCCATTACTGCTGCATTGGCTTCAAGGTACAGGAGCATGGGTTTAACCACTGTCCAATCAAGGGAGAAAATTGTGAGGATGAAAGTCCTGAAGGAAATGAATAGGTCAGGTGTGGAGAATATGCGTAACAAGATAGCAATGAAGAGTAATGTTATCCGAAACCTGCCAAATAATGTCCCATATTAG 1248 0.4303 MPGLTCNACNAEFKDDTEQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQSVIAQEKNKLNETPMLYSCALCGKDYKSSKAHAEHLKSRGHMIRASEGTSHADEKAIIKPLPKRVVNRPPPRREVDSSENEESEDEWEEVDPEDDLVDGTAKSLTDLNVNEHGENVDMDEDEDEDDNDEDDFEELDPSSCFMCDQKHKTIEDCMVHMHKHHGFFIPDVEYLKDPKGFLTYLGLKVQRDYMCLYCNDRCYPFSSLEAVRKHMAAKSHCKVHFGDGDGEEEVELEEFYDYSSSYVDDQGKLIVSGETANNVELVGGSELIITRKSGDRISTRTLGSREFLRYYRQKPRPSPANNLSITAALASRYRSMGLTTVQSREKIVRMKVLKEMNRSGVENMRNKIAMKSNVIRNLPNNVPY 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01660 415 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Spst8g01660 415 MobiDBLite consensus disorder prediction 166 187 - -
Spst8g01660 415 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
Spst8g01660 415 MobiDBLite consensus disorder prediction 130 146 - -
Spst8g01660 415 MobiDBLite consensus disorder prediction 98 129 - -
Spst8g01660 415 SUPERFAMILY beta-beta-alpha zinc fingers 174 246 IPR036236 -
Spst8g01660 415 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Spst8g01660 415 PANTHER ZINC FINGER PROTEIN 622 2 414 IPR040025 -
Spst8g01660 415 SMART c2h2final6 4 28 IPR013087 -
Spst8g01660 415 SMART c2h2final6 240 267 IPR013087 -
Spst8g01660 415 SMART c2h2final6 68 92 IPR013087 -
Spst8g01660 415 SMART c2h2final6 189 211 IPR013087 -
Spst8g01660 415 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 107 IPR013087 -
Spst8g01660 415 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Spst8g01660 415 Pfam C2H2 type zinc-finger (2 copies) 191 292 IPR041661 -
Spst8g01660 415 MobiDBLite consensus disorder prediction 98 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01660 Spst-Chr8 19345989 19348575 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01660 1 415 C2H2 Transcription Factor Family AT4G31420 65.952 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01660 K14816 - gmx:100796317 682.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01660 8 19345989 19348575 Spst8g01660 8 19345989 19348575 ECH