Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01651 ATGCCAGGGTTAACGTGCAACGCTTGCAACGCGGAATTCAAGGATGACACAGAGCAGAAGCTCCATTACAAGTCCGAGTGGCATCGCTACAACCTCAAGCGCAAGGTGGCTGGGGTTCCTGGGGTAACAGAAGCACTATTTCTGGCTAGGCAATCTGTGATTGCTCAAGAGAAAAATAAATTGAATGAGACCCCCATGCTGTATAGCTGTGCTCTTTGTGGAAAGGATTATAAAAGTTCTAAAGCTCATGCTGAGCACCTTAAATCACGTGGTCATATGATCCGGGCCTCTGAAGGAACTAGTCATGCAGATGAGAAGGCAATAATTAAGCCACTTCCAAAACGTGTTGTGAATAGACCTCCTCCTAGAAGAGAGGTAGATAGCTCTGAAAATGAAGAAAGTGAGGATGAATGGGAGGAGGTTGATCCTGAAGATGATTTAGTAGATGGGACTGCAAAGTCCTTGACTGATTTGAATGTGAATGAGCATGGTGAAAATGTTGATATGGATGAAGATGAAGATGACAATGATGAGAATCACTTTGAGGAGTTGGACCCCTCATGTTGCTTTATGTGTGATCAAAAGCACAAAACAATAGAAGACTGCATGGTTCACATGCACAAGCACCATGGATTCTTCATTCCAGATGTTGAGTATTTGAAGGATCCAAAAGGCTTCCTCACCTATCTTGGCCTGAAGGTCCAAAGGGACTACATGTGTTTGTACTGCAATGATAGATGTTATCCGTTCAGCAGCTTGGAAGCAGTCAGGAAACATATGGCAGCTAAAAGCCATTGTAAAGTGCATTTTGGTGATGGTGATGGTGAGGAGGAGGTAGAGTTAGAAGAGTTCTATGACTACAGCAGCAGTTACGTGGATGATCAGGGCAAGCTCATTGTATCTGGTGAAACAGCCAACAATGTAGAACTTGTTGGTGGGTCTGAACTTATAATCACCAGAAAATCTGGTGATAGGATATCAACCAGAACACTTGGTTCCCGTGAATTTTTACGTTATTATCGTCAGAAACCTCGGCCATCACAAGCAAATAATTTGTCCATTACTGCTGCATTGGCTTCAAGGTACAGGAGCATGGGTTTAACCACTGTCCAATCAAGGGAGAAAATTGTGAGGATGAAAGTCCTGAAGGAAATGAATAGGTCAGGTGTGGAGAATATGCGTAACACGATAGCAATGAAGAGTAATGTTATCCGAAACCTGCCAAATAATGTCCCATATTAG 1242 0.4308 MPGLTCNACNAEFKDDTEQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQSVIAQEKNKLNETPMLYSCALCGKDYKSSKAHAEHLKSRGHMIRASEGTSHADEKAIIKPLPKRVVNRPPPRREVDSSENEESEDEWEEVDPEDDLVDGTAKSLTDLNVNEHGENVDMDEDEDDNDENHFEELDPSCCFMCDQKHKTIEDCMVHMHKHHGFFIPDVEYLKDPKGFLTYLGLKVQRDYMCLYCNDRCYPFSSLEAVRKHMAAKSHCKVHFGDGDGEEEVELEEFYDYSSSYVDDQGKLIVSGETANNVELVGGSELIITRKSGDRISTRTLGSREFLRYYRQKPRPSQANNLSITAALASRYRSMGLTTVQSREKIVRMKVLKEMNRSGVENMRNTIAMKSNVIRNLPNNVPY 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01651 413 SMART c2h2final6 4 28 IPR013087 -
Spst8g01651 413 SMART c2h2final6 187 209 IPR013087 -
Spst8g01651 413 SMART c2h2final6 238 265 IPR013087 -
Spst8g01651 413 SMART c2h2final6 68 92 IPR013087 -
Spst8g01651 413 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Spst8g01651 413 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
Spst8g01651 413 MobiDBLite consensus disorder prediction 98 179 - -
Spst8g01651 413 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 107 IPR013087 -
Spst8g01651 413 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Spst8g01651 413 MobiDBLite consensus disorder prediction 130 146 - -
Spst8g01651 413 MobiDBLite consensus disorder prediction 98 129 - -
Spst8g01651 413 Pfam C2H2 type zinc-finger (2 copies) 189 290 IPR041661 -
Spst8g01651 413 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Spst8g01651 413 PANTHER ZINC FINGER PROTEIN 622 2 412 IPR040025 -
Spst8g01651 413 SUPERFAMILY beta-beta-alpha zinc fingers 172 225 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01651 Spst-Chr8 19258959 19261519 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01651 1 413 C2H2 Transcription Factor Family AT4G31420 65.789 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01651 K14816 - gmx:100796317 680.633