Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01616 ATGTTCTCCCTCTACTGTGAGCAAACGCTTTGGACCTTGGAGCCAATTTTGATGTTGTTAAAACTTCTAATGGGTGGGAGTGGGGATACCCCTTTTGCCTTATTCACAGGACCTATCCATTTGTTTCCGTGCCACAATTTTGTTCAGAATATCACTAACCTAGTCCCTGGAGTAGTCCTAATGCTCTTTTTGGGCATTCTTGGAGGACTCAATGCAGAACTGCAATATAAGGTTGGAGTGTCTATTGATGGGCTCCAGTATAGTTGGATTTGGTTCTTGGAGAACTTCAAGGAATCAAGTGATCATTCAATGCGATTGGTTTCTATTTACTGCTGGAGGCTGTCAAGTACCCCAGTAACCAGTACCATGGGAGAGGTGGCAATAATGCATTCTGAGCCTCTGCAGTTTGAGTGCAATGACATCAAACATATGACTGAAAATGAAGTGTATGCTCCAGAGTCAAATGCAGAGGACTTGCATACAGAAGAATCAAGTCAATCTACAGACCACAAAAATATCAATAACTTGCCAGAGAAGGGATACATGGAGTATGGATGTCAACATTACCGGAGAAGATGCCGAATCAGGGCCCCCTGTTGCAATGAGATTTTTGATTGCCGCCATTGTCACAATGAAGCAAAAAATGATATCAACATTGATCAGAAGCATAGACATGACATTCCCCGGCACCAAGTCAGGCAGGTGATTTGTTCACTTTGTGGGACAGAACAAGAGGTTCAGCAAAACTGTATAAATTGTGGTGTTTGTATGGGCAAGTACTTCTGTGGAACATGCAAGCTTTTTGATGATGATATATCTAAGCAGCAGTACCATTGCAGTGCCTGTGGAATTTGCAGAACTGGAGGAAGCGAAAATTTCTTCCATTGCATCAAGTGTGGTTGTTGTTACTCGACTCTGCTGAAAAACAGTCACCCTTGTGTAGAAGGAGCGATGCATCATGATTGCCCTGTTTGTTTCGAGTATTTGTTTGAATCAAGAAATGATATCACTGTTATGCCATGTGGGCATACAATCCATAAGAGCTGCCTGAATGAAATGAGGGAACATTTCCAGTATGCTTGCCCTCTCTGCTCGAAGTCAGTCTGTGATATGTCAAAGGTCTGGGAGAAATTTGATCTAGAGATTGCTGCTACACCAATGCCTGAACCATATCAAAATAAAATGGTTTGGATCCTTTGCAATGACTGTGGTAAAACTAATCACGTTCAGTTCCATTTTGTGGCACAAAAGTGCCCGAACTGCAAGTCCTATAATACACGACAAACATAA 1290 0.4217 MFSLYCEQTLWTLEPILMLLKLLMGGSGDTPFALFTGPIHLFPCHNFVQNITNLVPGVVLMLFLGILGGLNAELQYKVGVSIDGLQYSWIWFLENFKESSDHSMRLVSIYCWRLSSTPVTSTMGEVAIMHSEPLQFECNDIKHMTENEVYAPESNAEDLHTEESSQSTDHKNINNLPEKGYMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNDINIDQKHRHDIPRHQVRQVICSLCGTEQEVQQNCINCGVCMGKYFCGTCKLFDDDISKQQYHCSACGICRTGGSENFFHCIKCGCCYSTLLKNSHPCVEGAMHHDCPVCFEYLFESRNDITVMPCGHTIHKSCLNEMREHFQYACPLCSKSVCDMSKVWEKFDLEIAATPMPEPYQNKMVWILCNDCGKTNHVQFHFVAQKCPNCKSYNTRQT 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01616 429 SUPERFAMILY RING/U-box 321 370 - -
Spst8g01616 429 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 138 429 - -
Spst8g01616 429 MobiDBLite consensus disorder prediction 153 167 - -
Spst8g01616 429 MobiDBLite consensus disorder prediction 153 172 - -
Spst8g01616 429 ProSiteProfiles Zinc finger RING-type profile. 322 365 IPR001841 -
Spst8g01616 429 Pfam Ring finger domain 321 364 IPR001841 -
Spst8g01616 429 SUPERFAMILY Zinc hairpin stack 258 315 IPR037275 -
Spst8g01616 429 Pfam CHY zinc finger 186 267 IPR008913 GO:0008270
Spst8g01616 429 SMART ring_2 322 364 IPR001841 -
Spst8g01616 429 Pfam Zinc-ribbon 369 427 IPR039512 -
Spst8g01616 429 ProSiteProfiles Zinc finger CTCHY-type profile. 257 321 IPR017921 -
Spst8g01616 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 367 IPR013083 -
Spst8g01616 429 SUPERFAMILY CHY zinc finger-like 183 257 IPR037274 GO:0008270
Spst8g01616 429 ProSiteProfiles Zinc finger CHY-type profile. 179 255 IPR008913 GO:0008270
Spst8g01616 429 Gene3D - 393 429 - -
Spst8g01616 429 CDD RING-H2_Pirh2-like 321 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01616 Spst-Chr8 18625880 18635516 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01616 177 427 C2H2 Transcription Factor Family AT3G18290 39.300 1.09e-53 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01616 K10144 - gmx:100803569 644.039