Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01606 ATGGATATTATTGTTATCTCACCAGAACTGTGTCTTGAAGGTCCAAGCGACACTCTGCCATTGTTGATGGAGCGACCCGGGAGCTTAAACGGCAGTCAGCATGTTATAGAAATAGCTGGCAGTACGGATGCCTCCACAGCATCTGCGACACATCATGACAGGAATTTTAATGGCACAGATGCTACACCGCATGAAGAAAGAATTGGCGGTGCAAGGACGCCTCTTTCTCAGCCTTCAGTTTCAGTCAGTAGCTTATCTAATGGGTCTAATAATAGGAATTCCTCATTCATGAGACGAGGGGATACTCGTCGGAATAGGAGTCCTGTGCATTCGGGGTTATGGATATCAATTGAGCTGGTCCTCTTAGTGAGCCAGATTGTTGCATCTGTTGTTGTTTTGTCTTTGTCAAGGCATGAACATCCACGTACTCCATTGTTTCAATGGATCATTGGTTATGCTTCTGGATGTGTTGCTACCCTCCCTTTGCTTTATTGGCGGTATTATCATCATAACCATATAAGAGAGCAAGATTCATCTCAATCAAGGCAAACATCTCCTCGGATTAATGATCCTTCAGGGACACTACTTTTCAGTTCCAGAACTAATGGTGGAGAAGAGGGTCAGGCTGTTGCATCCTCCAGAAGCAATCAAGCTTCTGTGTTGATGAATAGAAGAATGAAGACTCTAGTGGAATACTTCAAAATATCCTTAGATTGCTTTTTTGCTGTATGGTTTGTTGTTGGAAATGTATGGATCTTTGGGGGACATTCGTCTGCTGATGAAGCTCCTAACCTGTACAGGTTATGTATAGTGTTTCTTGCATTTAGCTGTATTGGTTATGCTATGCCCTTCATTCTCTGTTCAACAATCTGCTGTTGTCTTCCTTGTATAATTTCCATCCTTGGGGTTAGAGAGGACATGTCTCAAAACAGAGGGGCAACTTCAGAATCTATTAATGCTTTGCCAACTTACAAGTTCAAGATGAAGAAAAATAAAAGAAATGGCGAAGGCAACTCAGCTGAAGGTGGAGTTGTTGCTGCAGGAACTGAAAAAGAGAGAATTATATCTGGAGATGATGCAGTTTGCTGCATCTGCCTGGCAAAGTATGAGAATAATGATGAGCTGAGAGAATTGCCTTGTTCTCATCTTTTCCACAAAGACTGCGTGGATAAATGGTTGAAGATAAATGCATTATGCCCTCTTTGCAAGAATGATGTTGGTGAGAATGTAACAGGATTGGTCTCAGGAGAAGATGCCAGCCAACATCGGAGTGAGAGCAGGATTGAGAATGGTCTCACCAATTCCTCAGTTTAG 1314 0.4254 MDIIVISPELCLEGPSDTLPLLMERPGSLNGSQHVIEIAGSTDASTASATHHDRNFNGTDATPHEERIGGARTPLSQPSVSVSSLSNGSNNRNSSFMRRGDTRRNRSPVHSGLWISIELVLLVSQIVASVVVLSLSRHEHPRTPLFQWIIGYASGCVATLPLLYWRYYHHNHIREQDSSQSRQTSPRINDPSGTLLFSSRTNGGEEGQAVASSRSNQASVLMNRRMKTLVEYFKISLDCFFAVWFVVGNVWIFGGHSSADEAPNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDMSQNRGATSESINALPTYKFKMKKNKRNGEGNSAEGGVVAAGTEKERIISGDDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKNDVGENVTGLVSGEDASQHRSESRIENGLTNSSV 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01606 437 SUPERFAMILY RING/U-box 353 409 - -
Spst8g01606 437 SMART ring_2 362 402 IPR001841 -
Spst8g01606 437 MobiDBLite consensus disorder prediction 43 107 - -
Spst8g01606 437 FunFam E3 ubiquitin-protein ligase 345 411 - -
Spst8g01606 437 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 23 406 - -
Spst8g01606 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 408 IPR013083 -
Spst8g01606 437 MobiDBLite consensus disorder prediction 74 96 - -
Spst8g01606 437 Pfam Ring finger domain 362 403 IPR001841 -
Spst8g01606 437 MobiDBLite consensus disorder prediction 416 437 - -
Spst8g01606 437 ProSiteProfiles Zinc finger RING-type profile. 362 403 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01606 Spst-Chr8 18518984 18527925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01606 16 409 C3H Transcription Factor Family AT1G80400 50.374 5.03e-141 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01606 - - gmx:100778728 738.413