Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01595 ATGTCTCAAACTAACTGGGAGGCTGATAAGATGTTAGATGTTTACATCCATGATTACCTAGTGAAGAGGGATTTGAAGGCCTCAGCTCAGGCTTTTCAACTTGAAGGGAAAGTGTCCTCGGACCCTGTTGCTATTGATGCACCCGGAGGATTTCTGTTCGAGTGGTGGTCTGTTTTCTGGGACATATTTATTGCCAGGACCAATGAGAAGCACTCAGAGGTTGCTGCATCTTATATTGAGGGTAGGGATAGGACTCATCTCTTAAATGGTGGTGCAAATGGGTTAGTTGGAAACCCTAGCACTGCAAATGCAATGGCAACAAAGATGTATGAGGAAAGGTTAAAACTTCCCCTTCAAAGGGACTCTTTGGAAGATGCAGCAATGAAGCAAAGATTCGGAGAACAACTATTGGACCCAAATCATGCCTCAATATTGAAGTCATCCGCAGCTACTGGGCAGCCGTCAGGTGCTCAATTTTTTGATTTCAGACAAGTTTTGCATGGTGCTGCTGGTGCAGCGTCTCCACAAGTTCAAGCACGTAGTCAGCAATTACCAGGGTCTACTTCGGATATAAAGAGTGAGATCAATCCTGTTTTAAATCCTAGAGCTGCAGGTCCTGAAGGATCATTGATAGCAATGCCTGTTGTTTCATTACAATTTATTCCTCACCCTGTTGTGGCAGAAGTAGCCTTCCTTGTTAACCTTGTGTCTGAAGCGTCCTCTTATCTGAAGTCTCTAGCAATGACCCTGCTAACCTTGTGTCTTCGACGTCATTTAGCCCTAGGATTGGAGCAACTGCGTTCTGGACTACTCCAACAACAGAAACCTCCTTTCATACAGTCTCCTCAAACTTTTCATCAACTTCCAATGTTGACACCACAGCATCAGCAACAGCTAATTCTGGCACAACAAAATTTGGCATCACCATCTGGCAGTGATGATAATAGAAGACTCAGAATGATGCTGAATAACAGGAATATGGGTGTAAGTAAGGATGGTCTGTCAAACCCTGTTGGTGATGTAGTATCAAATGTTGGATCAGCACTTCAAGTAGGTGGTGGACCTGCTTTTCAGCGTAGTGATACAGACTTGCTAATGAAGGTGAAACTGGCACAGTTGCATCAACAGCAGCAGAATGCTAATCCACAACAGCAGCAACTGCAGCAGCATACTCTTTCAAATCAGCAATCTCAGTCTTCAAATCATAACATGCATCAGCAGGATAAAATGGGGGGAGGTGGTGGTAGTGTCAATGTGGATGGTAGCATGTCAAACTCTTTTAGAGGCAATGATCAGGTTTCCAAAAGCCAGACTGGGAGAAAGAGAAAGCAGCCTGCATCTTCTGGTCCTGCCAATAGTTCTGGAACAGCTAATACAGCTGGTCCATCTCCAAGTTCAGCACCCTCAACTCCGTCTACACATACACCTGGTGATGTGATGTCAATGCCTGCTTTACCTCATAGTGGTAGTTCTTCAAAGCCATTAATGATGTTTGGAGCTGATGGTGCGGGAACTCTGACATCACCTTCAAACCAGTTGGCTGATGTGGATCGTTTTGTGGAGGATGGATCTCTTGATGATAATGTTGAGTCTTTTTTATCCCATGATGATACGGACCCAAGGGATACTGTTGGTCGTTGTATGGATGTAAGCAAAGGTTTCACGTTTTCTGAAATAAGTTCTGTACATGCAAGCATTAACAAAGTTGTCTGTTGCCATTTCTCGTCTGATGGGAAATTGCTTGCTAGCGGTGGCCATGACAAAAAGGCTGTTTTATGGTTCACAGATACTCTAAAACAAAAAGCTATTCTTGAAGAGCATGCTTCTTTAATCACTGATGTCCGTTTCAGTCCAAGCATGCCTCGCCTTGCAACATCTTCATATGACAAAACTGTCAGGGTGTGGGATGTTGATAATCCCGGATATTCACTTCGTACCTTTACGGGGCATTCTTCATCTGTTATGTCTCTAGATTTTCACCCTAATAAAGAAGATCTTATCTGCTCTTGTGATGTTGATGGTGAGATACGATATTGGAGCATTAACAATGGCAGTTGTGCTAGAGTCTCAAAGGGTGGCACTGCTCAGATGAGATTTCAACCTCGTCTAGGGAGGTACCTAGCTGCAGCTGCTGAAAATGTTGTTTCTATTCTTGATGTGGAAACACAAGCATGTCGATATTCATTGAAG 2190 0.437 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQLEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIEGRDRTHLLNGGANGLVGNPSTANAMATKMYEERLKLPLQRDSLEDAAMKQRFGEQLLDPNHASILKSSAATGQPSGAQFFDFRQVLHGAAGAASPQVQARSQQLPGSTSDIKSEINPVLNPRAAGPEGSLIAMPVVSLQFIPHPVVAEVAFLVNLVSEASSYLKSLAMTLLTLCLRRHLALGLEQLRSGLLQQQKPPFIQSPQTFHQLPMLTPQHQQQLILAQQNLASPSGSDDNRRLRMMLNNRNMGVSKDGLSNPVGDVVSNVGSALQVGGGPAFQRSDTDLLMKVKLAQLHQQQQNANPQQQQLQQHTLSNQQSQSSNHNMHQQDKMGGGGGSVNVDGSMSNSFRGNDQVSKSQTGRKRKQPASSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVMSMPALPHSGSSSKPLMMFGADGAGTLTSPSNQLADVDRFVEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGFTFSEISSVHASINKVVCCHFSSDGKLLASGGHDKKAVLWFTDTLKQKAILEEHASLITDVRFSPSMPRLATSSYDKTVRVWDVDNPGYSLRTFTGHSSSVMSLDFHPNKEDLICSCDVDGEIRYWSINNGSCARVSKGGTAQMRFQPRLGRYLAAAAENVVSILDVETQACRYSLK 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01595 730 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 604 639 - -
Spst8g01595 730 Gene3D - 639 730 IPR015943 GO:0005515
Spst8g01595 730 ProSiteProfiles Trp-Asp (WD) repeats profile. 562 593 IPR001680 GO:0005515
Spst8g01595 730 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Spst8g01595 730 Pfam WD domain, G-beta repeat 602 636 IPR001680 GO:0005515
Spst8g01595 730 Pfam WD domain, G-beta repeat 562 593 IPR001680 GO:0005515
Spst8g01595 730 Pfam WD domain, G-beta repeat 643 680 IPR001680 GO:0005515
Spst8g01595 730 SMART Lish 8 40 IPR006594 GO:0005515
Spst8g01595 730 MobiDBLite consensus disorder prediction 173 194 - -
Spst8g01595 730 PANTHER TRANSCRIPTION ACTIVATOR MSS11 84 729 - -
Spst8g01595 730 MobiDBLite consensus disorder prediction 375 494 - -
Spst8g01595 730 SMART WD40_4 640 680 IPR001680 GO:0005515
Spst8g01595 730 SMART WD40_4 597 636 IPR001680 GO:0005515
Spst8g01595 730 SMART WD40_4 555 594 IPR001680 GO:0005515
Spst8g01595 730 MobiDBLite consensus disorder prediction 375 407 - -
Spst8g01595 730 MobiDBLite consensus disorder prediction 418 477 - -
Spst8g01595 730 ProSiteProfiles Trp-Asp (WD) repeats profile. 604 639 IPR001680 GO:0005515
Spst8g01595 730 ProSitePatterns Trp-Asp (WD) repeats signature. 623 637 IPR019775 -
Spst8g01595 730 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 647 685 - -
Spst8g01595 730 MobiDBLite consensus disorder prediction 175 194 - -
Spst8g01595 730 SUPERFAMILY WD40 repeat-like 558 729 IPR036322 GO:0005515
Spst8g01595 730 Gene3D - 525 638 IPR015943 GO:0005515
Spst8g01595 730 ProSiteProfiles Trp-Asp (WD) repeats profile. 647 689 IPR001680 GO:0005515
Spst8g01595 730 Pfam LisH 10 35 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01595 Spst-Chr8 18332452 18341779 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01595 574 722 Miscellaneous Gene Families AT5G08390 25.658 5.03e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Spst8g01595 WD40 3.4e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01595 - - gmx:100779972 976.852