Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01571 TTATGGACCAAGTTTTTGCTCATATTGGTCTTCTACACAGCTTGGATATGCCCATTTGAATTTGGTTTCCTTGAAAAATCAAAGGGTCCATTAGCTATAACAGACAATGTTGTAAACGGGTTTTTTGCGATTGACATTGTGCTCACCTTCTTCGTTGCTTACCTTGATAAGTCTACTTATCTATTAGTTGATGACCACAAGCTCATTGCTTTGAGATATGCCAAATCTTGGTTGATTTTGGATGTCATTGCTACCATTCCTTATGAAGTTGTTCGTAGTATGTTGCCACCTCCTCTTCAGTTATATAGTTACCTCAATATTCTCCGGCTATGGCGCCTCCACCGAAGAGACACTGTCCAAACTGCCTCAAATTTTGCCAAAAGGAATCACTTGCCTGCTCGTTTGCGAGAACAAATATTTGCTCATTTGCTTATGAAGTATAGAACAGATTTAGAAGGACTACAACAACAAGAGATCATTGATTCCCTTCCAAAAGCCATTCAGTCTAGCATCTCACACTTCCTATTTTTTTCAGTTGTAGACAAAGTGTACTTGTTTCATGGAGTGTCAAATGACCTACTTTTTCAACTGGTCACAGAGATGAAAGCTGAGTATTTTCCTCCAAAGGAAGATGTGATTTTGCAAAATGAAGCACCAACAGACTTTTATATATTCATTACTGGAGCTGCTCATTTACATGAAATAGGGAATCCAGATATGAAAGGAATTTTGGCAGAAGTAGAAGTAATGTTGGCTAGGGGAAAAATGGATTTGCCTATCAGTTTATTGTTTGCAGCTAGTAGAGGTGATGATATTTTGTTGAATCAATTGCTAAAGAAGGGTTCAGATCCAAATGAGCGGGATAAGAATGGAAAGACAGCATTGCACATTGCAGCTTCCAAAGGCCATGAACATTGTGTACTTTTGCTTGTAGAATATGGAGCTAATCCCAACATCAAAGACATAGAAGGAAACTCTCCACTATGGGAAGCAATTAGGAGTGAACATGAAGCTGTGATGAAAATTCTACTACAAAATGGTGCAGAAATATTATCTAATGATGTAGTTGAATATGCACGCCTGGCTATTGAGCAAAATAAAATAGATATGCTCAAGGACATTCTTCAACGTGAAGGGGAAGCAGCAAAAAGCACGAGTCAAATGACCACACTACTACATGCTGCAGTGTGTGAAGGAAATGCTGAAATAGTGCAGTACCTTCTAGATCAAGGAGCAGACGTTGATATGCAAGATAGTAATGGCTTGACTGCAAGGTCTTTAGCAGAACACCAATGCCATGAAGAAATACTGAACATATTTAAGAAAATTGGACACAACAATACGACACATAGTATGCCCCCTATTGCATGTTATGTTGGTAGGTGTAAAAGTGAACCCACTATACCAGGCATTTCCCAACCCAACAACAACAAACCACCTAATAAAGAAATGGCATGGTTTGATAGTTATCAAAGAAGAAGGGCCAACCCTTTCCACAATTCCATTTTTGGAATGATGTCATCAGCACATCTTGATAGAAAAGATTCAATAGCTACATCTCAAATCAGTTACACTATTAAAGAAGAAGTGACAGCCAGAGTAACAGTTAGTTGTCCAGAGAAAGGTGAAAGAGCCAAGAAGCTTATCTTTTTGCCTAGTTCTCTTCAAGAATTGCTACGTATTGGTGCTCGAAAGTTTGATTTTTCTGCCTCCAAAATATTGACCTCAGAAGGAGCTGAAATTGAAGACATAGATGTCGTAAGAGATGGTGATCATCTTCTTCTCGTATAG 1791 0.3858 LWTKFLLILVFYTAWICPFEFGFLEKSKGPLAITDNVVNGFFAIDIVLTFFVAYLDKSTYLLVDDHKLIALRYAKSWLILDVIATIPYEVVRSMLPPPLQLYSYLNILRLWRLHRRDTVQTASNFAKRNHLPARLREQIFAHLLMKYRTDLEGLQQQEIIDSLPKAIQSSISHFLFFSVVDKVYLFHGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDFYIFITGAAHLHEIGNPDMKGILAEVEVMLARGKMDLPISLLFAASRGDDILLNQLLKKGSDPNERDKNGKTALHIAASKGHEHCVLLLVEYGANPNIKDIEGNSPLWEAIRSEHEAVMKILLQNGAEILSNDVVEYARLAIEQNKIDMLKDILQREGEAAKSTSQMTTLLHAAVCEGNAEIVQYLLDQGADVDMQDSNGLTARSLAEHQCHEEILNIFKKIGHNNTTHSMPPIACYVGRCKSEPTIPGISQPNNNKPPNKEMAWFDSYQRRRANPFHNSIFGMMSSAHLDRKDSIATSQISYTIKEEVTARVTVSCPEKGERAKKLIFLPSSLQELLRIGARKFDFSASKILTSEGAEIEDIDVVRDGDHLLLV 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01571 596 Pfam KHA, dimerisation domain of potassium ion channel 533 595 IPR021789 -
Spst8g01571 596 Pfam Ion transport protein 2 115 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Spst8g01571 596 ProSiteProfiles Ankyrin repeat profile. 323 355 IPR002110 GO:0005515
Spst8g01571 596 Gene3D - 259 442 IPR036770 -
Spst8g01571 596 SMART ANK_2a 323 352 IPR002110 GO:0005515
Spst8g01571 596 SMART ANK_2a 257 286 IPR002110 GO:0005515
Spst8g01571 596 SMART ANK_2a 387 416 IPR002110 GO:0005515
Spst8g01571 596 SMART ANK_2a 290 319 IPR002110 GO:0005515
Spst8g01571 596 CDD CAP_ED 185 233 IPR000595 -
Spst8g01571 596 SUPERFAMILY cAMP-binding domain-like 115 234 IPR018490 -
Spst8g01571 596 ProSiteProfiles Ankyrin repeat region circular profile. 387 418 - -
Spst8g01571 596 ProSiteProfiles Ankyrin repeat profile. 290 322 IPR002110 GO:0005515
Spst8g01571 596 SUPERFAMILY Ankyrin repeat 261 445 IPR036770 -
Spst8g01571 596 ProSiteProfiles KHA domain profile. 533 596 IPR021789 -
Spst8g01571 596 PANTHER POTASSIUM CHANNEL AKT1 241 595 IPR045319 GO:0005249|GO:0006813
Spst8g01571 596 Gene3D Jelly Rolls 149 258 IPR014710 -
Spst8g01571 596 ProSiteProfiles cAMP/cGMP binding motif profile. 185 268 IPR000595 -
Spst8g01571 596 Gene3D - 2 145 - -
Spst8g01571 596 ProSiteProfiles Ankyrin repeat profile. 387 419 IPR002110 GO:0005515
Spst8g01571 596 ProSiteProfiles Ankyrin repeat region circular profile. 290 321 - -
Spst8g01571 596 PRINTS Ankyrin repeat signature 403 417 IPR002110 GO:0005515
Spst8g01571 596 PRINTS Ankyrin repeat signature 291 306 IPR002110 GO:0005515
Spst8g01571 596 SUPERFAMILY Voltage-gated potassium channels 2 118 - -
Spst8g01571 596 ProSiteProfiles Ankyrin repeat region circular profile. 323 350 - -
Spst8g01571 596 Pfam Ankyrin repeats (3 copies) 363 418 IPR002110 GO:0005515
Spst8g01571 596 Pfam Ankyrin repeats (3 copies) 262 354 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01571 Spst-Chr8 17652630 17657992 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01571 116 595 Ion Channels AT2G25600 44.000 1.80e-139 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01571 K21867 - gmx:100808832 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01571 8 17652630 17657992 Spst8g01571 8 17652630 17657992 ECH