Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01553 ATGGGAGATACAAAGACTGAACCGTACGATGAGGACCTTCTTGACTATGAAGACGAAGAAGAAAAGGAGCCTGAAAGTGCTAATAAAGTCAACGGTGAAGCTGTAAAGAAGGGTTATGTTGGAATTCACAGTTCAGGATTTAGAGATTTTTTGCTGAAACCAGAGCTTCTTCGAGCTATTGTGGACTCTGGATTTGAACACCCTTCTGAAGTGCAACATGAGTGCATACCTCAAGCTATACTTGGAATGGATGTGATTTGTCAAGCTAAATCTGGAATGGGAAAAACTGCTGTATTTGTTCTTTCTACCCTGCAGCAGATTGACCCTGTTGCAGGGCAAGTTTCTGCACTTGTCCTATGTCATACAAGGGAATTAGCATACCAGATATGCAACGAATTTGAAAGGTTTAGCACCTACCTACCTGATCTGAAGGTTGCTGTCTTTTATGGTGGTGTCAACATTAAAGTTCACAAGGATCTATTGAAGAATGAATGTCCTAGTATTGTTGTTGGTACACCTGGAAGAATACTTGGATTGGCGAGGGATAAGGACCTTTCTTTGAAGAATGTTAGGCATTTCATTTTGGATGAATGTGATAAGATGCTAGAATCTCTGGACATGAGGAAAGACGTCCAAGCTATTTTCAAGATGACACCCCATGATAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAGGAAATACGACCTGTCTGCAAAAAATTTATGCAAGATCCAATGGAAATTTATGTTGATGATGAAGCAAAGTTGACCCTTCATGGACTTGTGCAGCACTACATCAAGTTGAAAGAGGAGGAGAAGAACAGGAAGTTGAACGACCTTCTTGATGCACTGGACTTCAATCAAATTGTTATTTTTGTGAAAAGTGTTAGTAGAGCAGCAGAACTGGACAAACTACTTAGAGAGTGCAACTTTCCATCTATTTGCATTCATTCTGGAATGTCTCAGGAAGAACGGTTAAAGCGTTATAAAGGTTTTAAGGAGGGTCATACAAGAATTCTAGTGGCAACAGATTTGGTTGGAAGGGGAATCGACATTGAACGTGTGAATATTGTCATAAACTATGATATGCCGGATTCTGCTGATACATACTTGCACAGGGTTGGCCGTGCTGGAAGATTTGGAACCAAAGGCCTTGCAATTACATTTGTTTCATGTTCGACTGATGTTGATGTTCTCAACAATGTTCAGTCCAGGTTTGAAGTGGATATAAAGCAGCTTCCTGAGCAGATCGATACAGCTTCCTACATTGCAATGGTAAGGAAACCTCGTGATGATTTAAGAGAATATGAAGTCCTACATTTGATTTATCATAAATGTGGAATGCATGTTGATGTGGCTACAAACGCCCCTTTGAATAAAGAAGGAATTCCAGTGACTGGGAACATTGCAGTAGTTGTTGGTGGAGGTTAG 1434 0.4031 MGDTKTEPYDEDLLDYEDEEEKEPESANKVNGEAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICNEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPSIVVGTPGRILGLARDKDLSLKNVRHFILDECDKMLESLDMRKDVQAIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQIVIFVKSVSRAAELDKLLRECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQIDTASYIAMVRKPRDDLREYEVLHLIYHKCGMHVDVATNAPLNKEGIPVTGNIAVVVGGG 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01553 477 CDD SF2_C_DEAD 262 391 - -
Spst8g01553 477 Gene3D - 41 257 IPR027417 -
Spst8g01553 477 Pfam Helicase conserved C-terminal domain 275 382 IPR001650 -
Spst8g01553 477 MobiDBLite consensus disorder prediction 1 29 - -
Spst8g01553 477 CDD DEADc_DDX39 44 251 - -
Spst8g01553 477 FunFam DEAD-box ATP-dependent RNA helicase 56-like 33 251 - -
Spst8g01553 477 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 45 73 IPR014014 GO:0003724
Spst8g01553 477 Pfam DEAD/DEAH box helicase 70 235 IPR011545 GO:0003676|GO:0005524
Spst8g01553 477 FunFam DEAD-box ATP-dependent RNA helicase 258 426 - -
Spst8g01553 477 Gene3D - 258 426 IPR027417 -
Spst8g01553 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 396 IPR027417 -
Spst8g01553 477 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 43 400 - -
Spst8g01553 477 SMART ultradead3 64 265 IPR014001 -
Spst8g01553 477 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 261 422 IPR001650 -
Spst8g01553 477 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 76 249 IPR014001 -
Spst8g01553 477 SMART helicmild6 301 382 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01553 Spst-Chr8 17196576 17204500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01553 22 424 Eukaryotic Initiation Factors Gene Family AT5G11200 82.658 0.0 744
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01553 K12812 - gmx:100796232 772.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01553 8 17196576 17204500 Spst8g01553 8 17196576 17204500 ECH
Spst9g00796 9 6865179 6871275 Spst8g01553 8 17196576 17204500 ECH
Spst8g01553 8 17196576 17204500 Spst9g00796 9 6865179 6871275 PCT