Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01550 ATGGTGCAAGGAAGGAAGTTCAGAGGAGTAAGGCAACGCCAATGGGGTTCATGGGTGTCTGAAATTCGTCACCCTTTACTGTTAACCAAAGTTTATATTAACTCGGACAGGAAGAGAAGGGTGTGGCTAGGGACATTTGAGACAGCAGAGGCTGCAGCAAGGGCATATGACCAAGCAGCCATTTTGATGAGTGGTCAAAATGCCAAGACCAATTTCCCTGCACCAACACTGAATCAGCCTCAAGGTGCCACCACTTCCACTCCTTGTGAAGACCCCTTCTCATCTCCCAATGTTCTTTCTGAGCACCTGAGTAGAAAGCTGAAGAAGTGCTGCAAAGACCCTTCTCCATCCCTCACATGTCTCAGGCTAGATGCTGACAATTCCCACATTGGAGTGTGGCAAAAGGGTGCAGGACCACGTTCAGACTCTAATTGGATCGTGAGGGTGGAGCTTGGGAAGAAACATGGAGAGGGTGAATCAAGTGTTTCAGAAGGGTCACCTCAGAAAAGTGGTATTGATGGTGATGATGAAGAAGATAGAATTGCCATGCAGATGATCGATGAACTTCTTAATTGGAATTATCCATGTGGTTCAATTAATTAA 603 0.4627 MVQGRKFRGVRQRQWGSWVSEIRHPLLLTKVYINSDRKRRVWLGTFETAEAAARAYDQAAILMSGQNAKTNFPAPTLNQPQGATTSTPCEDPFSSPNVLSEHLSRKLKKCCKDPSPSLTCLRLDADNSHIGVWQKGAGPRSDSNWIVRVELGKKHGEGESSVSEGSPQKSGIDGDDEEDRIAMQMIDELLNWNYPCGSIN 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01550 200 CDD AP2 6 74 IPR001471 GO:0003700|GO:0006355
Spst8g01550 200 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 144 - -
Spst8g01550 200 MobiDBLite consensus disorder prediction 154 179 - -
Spst8g01550 200 SMART rav1_2 6 79 IPR001471 GO:0003700|GO:0006355
Spst8g01550 200 Gene3D AP2/ERF domain 5 74 IPR036955 GO:0003700|GO:0006355
Spst8g01550 200 FunFam Ethylene-responsive transcription factor 2 5 74 - -
Spst8g01550 200 ProSiteProfiles AP2/ERF domain profile. 6 73 IPR001471 GO:0003700|GO:0006355
Spst8g01550 200 SUPERFAMILY DNA-binding domain 6 74 IPR016177 GO:0003677
Spst8g01550 200 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Spst8g01550 200 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Spst8g01550 200 Pfam AP2 domain 6 64 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01550 Spst-Chr8 16910629 16911780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01550 1 199 AP2-EREBP Transcription Factor Family AT5G25390 56.500 9.12e-70 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst8g01550 AP2 4.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01550 - - gmx:100784305 300.056