Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01517 ATGCATGCTAGAAAGCAAAGTGATGGATATGTTGAATTGTGCTCAAGACAGAGAGCCTGCTCTATTCAAGGTCACATGAGCATGTCTACTATAAACTCAGATACCTTCTGCTCTGTGTGTCGAAGCTCAAGCAATGATAAAATCAACTGTTTGTTGGAATGCTGTCGATGCCTAGTTAGAGCGTGTGTCCTCTGTGGTTATGGAGGTGGAGCCATGACTCGAGCGACGATGAGTCACATGATTGTCAAGAGCCTCCTAAAAGTGTGGAATGGTGAGAAATATGGCATGCCTAAGCATACAACTTCATGTGAATTTTTTGAAAAGGAAATAGATGCATTCCCATCCTCAAAAGCAGGTTCAAAAGTTGATCAAGAAAGTGTTTTTCTGGAGTCCAAAGTTGTTGATACATCGACAGATCTGGTGAAAGTTCAAATATCTAAAAATCACGTGCAACACACCCTTACCACTGTTTCTAATTTCAAGGTTCATAACAGCATTACAGCAGGAGTTCTTGATGCAACTGTTAAACAATGGATTCACGTGGTTTGTGGTCTTTGGACTCCTGGAACAAGGTGCCTAAATGTTGACACAATGAGTGCTTTTGATGTATCTGGTGTTTTGCGTCCCAGAGCAGATGTGGTTGCTATATGGATGGCTGATTGCTCTGTCAAGTTTCATCCTTGGTGTGCTCATCAAAAGGGCTCTGTTAATCCCATCAAAACATGTTTGGAGCTTGAATCAGAATTGCTAAACCTGTTACAAAGTGAGACTGAAGGTATTGATGACGAGAAGATTGGATTTTATGGAAGATGCATGCTTCATACTATTGAACCTAGATATCTGTCTATATATGATCCTATTGATGAAATGGGAAGTCAAGAAGAAAAGGAATTCACCTGTGCCAGAGCAGGGGTATTTTCTTCGTTCATTGCAATTTTGGGACTTCATCTCCTCTCGTGGGGTTATAAGGGCCGCAGATGGGATGGTTTTCAGAATAGTCACTGCCAAGCTGGATCCCTTGTGCCTGAGGAGCAGCTAAATGCTTGGATTCACATCAATGGGCAGAAATTATGTTCTCAGGGACTCACAAAATTCCCAGATTTAGATATGGAGCATGACTGTCGAAAGGAATATGCTCGGTACAAACAAGCAAAGGGATGGAGACGCCTTGTTGTTTACAAGTCCCGTATACATGGTCTTGGTCTTTACACTTCTCGATTCATTTCCCGGGGTGAAATGGTGGTTGAATATATTGGTGAAATTGTGGGACTGCGTGTGGCTGATAAAAGAGAGAAGGATTATCAATCTGGAAAGAAACTTCAGTACAAGAGTGCTTGCTACTTCTTCAGGATAGACAGAGAGCATATTATTGATGCTACAAGGAAAGGGGGGATTTCTCGGTTTGTTAACCACTCATGCCTGGCGCTATATGAACTGATGACTTGCCATTATGGGCTACTTGGCAGTGTTCATGGGGCCTGGAAAATACAAGTCACTGCAATGTAA 1506 0.4216 MHARKQSDGYVELCSRQRACSIQGHMSMSTINSDTFCSVCRSSSNDKINCLLECCRCLVRACVLCGYGGGAMTRATMSHMIVKSLLKVWNGEKYGMPKHTTSCEFFEKEIDAFPSSKAGSKVDQESVFLESKVVDTSTDLVKVQISKNHVQHTLTTVSNFKVHNSITAGVLDATVKQWIHVVCGLWTPGTRCLNVDTMSAFDVSGVLRPRADVVAIWMADCSVKFHPWCAHQKGSVNPIKTCLELESELLNLLQSETEGIDDEKIGFYGRCMLHTIEPRYLSIYDPIDEMGSQEEKEFTCARAGVFSSFIAILGLHLLSWGYKGRRWDGFQNSHCQAGSLVPEEQLNAWIHINGQKLCSQGLTKFPDLDMEHDCRKEYARYKQAKGWRRLVVYKSRIHGLGLYTSRFISRGEMVVEYIGEIVGLRVADKREKDYQSGKKLQYKSACYFFRIDREHIIDATRKGGISRFVNHSCLALYELMTCHYGLLGSVHGAWKIQVTAM 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01517 501 Gene3D SET domain 333 485 IPR046341 -
Spst8g01517 501 SUPERFAMILY SET domain 378 473 IPR046341 -
Spst8g01517 501 SMART set_7 388 491 IPR001214 GO:0005515
Spst8g01517 501 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 17 473 - -
Spst8g01517 501 ProSiteProfiles SET domain profile. 388 501 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01517 Spst-Chr8 16019514 16024737 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01517 389 473 C2H2 Transcription Factor Family AT2G23740 35.714 2.99e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Spst8g01517 SET 0.00013 No_clan