Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01508 ATGGCCAGACCACAACAGCGTTACCGAGGTGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCCATTTTGAAGACTAGGATATGGCTTGGTACATTTGAAACAGCTGAGGATGCAGCTAGAGCCTATGATGAAGCAGCTAGGCTAATGTGTGGTGCCAGGGCAAGGACAAACTTCCCTTTCAACCCAAATGTTTCCCACACATCATCTTCTAGTTCAAAGCTTCTCTCAGCAACTTTGACTGCCAAACTGCACAGGTGCTACATGGCTTCTTTGCAAATGACAAGACAGGCTTTGGCATCATCTGAGTCTCAGAGAACACCTTCAGTGCCAAATGCCACCTCCACAACCCCACCAAGCAGCTTCATTGTCAAGAGTGACCAAACCCATGCAGAGTTACACAAGAGACCGGAGGAGGAGCAAGAGTTAGAGGCCAACAGGGGTGTTAAAAGGGTCAGAGCTGTGGAAAGTGTTCCTCTACAGTTCAAGCCTCTTGAAGAAGATCACATAGAGCAAATGATTGAGGAGCTTCTTGATTATGGTTCTATTGAGCTCTGCTCTGTCTTTCCACCCCAGGCCCATTAA 597 0.4841 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGARARTNFPFNPNVSHTSSSSSKLLSATLTAKLHRCYMASLQMTRQALASSESQRTPSVPNATSTTPPSSFIVKSDQTHAELHKRPEEEQELEANRGVKRVRAVESVPLQFKPLEEDHIEQMIEELLDYGSIELCSVFPPQAH 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01508 198 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Spst8g01508 198 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Spst8g01508 198 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Spst8g01508 198 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Spst8g01508 198 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 129 - -
Spst8g01508 198 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Spst8g01508 198 MobiDBLite consensus disorder prediction 131 150 - -
Spst8g01508 198 MobiDBLite consensus disorder prediction 103 126 - -
Spst8g01508 198 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Spst8g01508 198 MobiDBLite consensus disorder prediction 132 150 - -
Spst8g01508 198 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Spst8g01508 198 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Spst8g01508 198 FunFam Ethylene-responsive transcription factor 2 6 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01508 Spst-Chr8 15868925 15869997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01508 1 196 AP2-EREBP Transcription Factor Family AT5G25190 64.286 1.05e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst8g01508 AP2 6.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01508 - - gmx:100785918 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01508 8 15868925 15869997 Spst9g00735 9 6313303 6314063 PCT