Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01503 ATGGAAGGAGTAAGCAAGAAGGAGCCATACTTTTGTGACAGACCTAGCATCTTCTCTTCTGCTCCAGAGGCACCCCCTAGTCCAAGTACTCCACTTCAGCATCCACGTGAAAAGAAACAGCTATCTGTTGATGAAGAAGAGGAAGAAAATAAGGAGCCAAGGCAAGTTACCCTATTAGATCTAAATGTCTCAGGTGATGATTCTTGTACTCCAGAAGGACTAGAACTCAACCTCATAACCTGTTTGGATGTGGGGTCATTATCAAATGCCAATTCTTCATCAGAAACCCCTCTTGGTTCTTGTGCAGCTGAACCAAGAGTGTTCTCTTGCAACTACTGTCACAGAAAGTTCTACAGTTCACAAGCGCTGGGGGGTCACCAAAATGCACACAAGAGGGAGAGGTCAATAGCAAAGAGAGGGCACAGGTTTGGATCACAGATAATGGCCTTTGGCCTTCCCTTATTGCATAATAACAACCACTATGCTAGCTTGGCTTCTCTACCCCTCTATGGTGCTTGCAACAATAGAGGAGGAGCTCTTGGAATTCAAGCACACTCCATGATCCAGAAGCCTTCTCATCATCATCATGCGAGTGGATTTGGAAGCTCTTATGCACACCATCACGGTTGGTCAAGACCCATCATTGACCAACAACCGGGAATAGCAAAACTAGCTGTGGCTGATTTTCACAGAACAAAATCAGCATTTTCGTCATCACAAACAAGTGTTGGTAGGTTTGAAATGGTTAATACCATGATGAATTCTTCAGCCAATAAGGAAAGCAGTGGATGTGTGGCAAGTGGTGAAACTCGTTTGAAGGGTAATCAAGAAGAAATGAAGCACCTTGATTTATCCCTCAAGCTCTAG 867 0.4429 MEGVSKKEPYFCDRPSIFSSAPEAPPSPSTPLQHPREKKQLSVDEEEEENKEPRQVTLLDLNVSGDDSCTPEGLELNLITCLDVGSLSNANSSSETPLGSCAAEPRVFSCNYCHRKFYSSQALGGHQNAHKRERSIAKRGHRFGSQIMAFGLPLLHNNNHYASLASLPLYGACNNRGGALGIQAHSMIQKPSHHHHASGFGSSYAHHHGWSRPIIDQQPGIAKLAVADFHRTKSAFSSSQTSVGRFEMVNTMMNSSANKESSGCVASGETRLKGNQEEMKHLDLSLKL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01503 288 MobiDBLite consensus disorder prediction 1 53 - -
Spst8g01503 288 MobiDBLite consensus disorder prediction 37 53 - -
Spst8g01503 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 135 IPR013087 -
Spst8g01503 288 Gene3D Classic Zinc Finger 96 148 - -
Spst8g01503 288 SUPERFAMILY beta-beta-alpha zinc fingers 105 135 IPR036236 -
Spst8g01503 288 ProSitePatterns Zinc finger C2H2 type domain signature. 110 130 IPR013087 -
Spst8g01503 288 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 6 288 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01503 Spst-Chr8 15707147 15708013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01503 27 288 C2H2 Transcription Factor Family AT5G10970 39.259 6.74e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst8g01503 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01503 - - gmx:100809569 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01503 8 15707147 15708013 Spst9g00729 9 6267579 6269503 PCT