Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01500 AATTTTTCAAAGTTAAGTGAACAAATTAAGAAAATGACAGTTGTGGAGGATCATAAAATGGATGAGTTTCCCAGAGGAATGCGAGTTCTTGCTGTTGATGATGACTCAACATGTCTCATGATTTTGGAGACTATGCTACGAAGGTGCCAATATCATGTGTTGTCTGTAAATGATGACCCTAAGATGGTGATGAAGGGAATTACACATGGAGCTTGTGATTATCTACTGAAACCTGTTAGAATTAAGGAAATACAGAACATTTGGCAGCATGTTGTCAGAAGGAAGACGATTGATTCGAAGGAGTGGAACAAAACCAGCTACCAAGACAATGTTAATGCTGATAGTAATGAAAGAGGGTCGGTAGCAAAAGGAAATTCAGATCAAATTGGAAAGTCTTCCAGAAAAAGGAAGGATGAGGATGAGGATGATTATGAGGAGAATGAAAATGGCCATTACAATGAGGACTCATCAAGTCACAAGAAACCTCGAGTTGTTTGGAGTGTTGAACTGCACCGCAAGTTTGTTTCTGCTGTCAATCAATTAGGCTTTGAAAAAGCTGTGCCTAAAAAGATTCTTGACTTGATGAATGTTGAAAAGCTTACAAGGGAGAATAAATATAGGCTTTACCTGAAAAGAATTAACTCTGCGGCGAACCGACAGGCTAATATGGTGGTAGCCTTAGGCACTGCAGATTCATCCTATTTGAGAATGGATTCTCTGAGTGGGGTTGGACATTTGACGTCATTGACTGGAGCTCAACAGTTTCATAATAATACTTTCAGACCCTTTGGATCCGGTGGGATGGCTGGAAGATTGAACACTTCTTTTGGTGTGAATGTGCATGGGTTGCCTTCTTCAGAAACTCTTCAGTTGGGTCATGCTCAAAATTTACACAAATCTATACATGATCCACTTAAGTTCCAACCAACAATAACTTGTGGTAACCAGAATGGTATTCAGGGAATATCAATGTCTACAGGTCTTGATCAATTCCAACATAATAAGGGTGTTAGTGTTGGTGTTAGTCCTATTCAAAACATTTCCCCTCTTATTGATGTTCAACCAAATTTGTCAATACCAAATAAACTCCCAGATCTGATACCAAAAGCAATAATGGGTTGCTCACCCTCTCCAGTTTTGGACATATCAAACAATGCTTTGGTATTGAAAGCTGAAAGTGAAAACACCCAAGGGAGTGGAATGATATATGGTCAAACTTCATTAGCCTCTCAGCATTCACAATTCTCACTCCCTTTGCTGGAACAGGGTAGGTGTAGTGATATTTGGTCAAATTCTGCTGCTGAGTCATCTGGGATAAATTCTTACCCTCCAAGTGAAACTTTTCAAGTAAGGAATCTGAGTTGTGCTTCATCCATTACTACACTGTCTAACGAATCTCATGATCCACTAAAAGATATGCACTCCCAAGGAGTTTTTTTTCCAAATAATTCTGGACAAATAAGCAATAATGTGGCGCCATTTCAAGTGTGGAACGACAATAATGATGATAGTACTTTCCATTCAAATATTTTTGGTAATTCAATAGACGCCCTGATTGATACAGATGGCCATAGTTCTATTAACTCAACCTACAACAGAAACACGGACTTCAGTTTTTTTTATCCCTCACTAATGAAGCCTGATGGAATTATGGGATTGAGTGAAGAAAACACATTGAAACAACAACAGGAGTACACCCTGAACCAGAACAAGTCTCAAAACAATCGTGCCGCTAATAATCTTGTTTCACTGGAAGAATTTGTCAGTTCAATGACGAACCAGGAATTGGTGGATTGGACATACTTGCCCGTGTTTCATTTCCTCGATGCCCTTAATAGATGTCAATACTTCATGCGCCTTGGTCTATATTTAAGGGCACTCACAAGTATTACTTTCAGCAAGAGCTTTTCTCCAATTGTGAATAATGCTTTGTCTATGGATGTGTCCTCTGGTGCATTATGGAGTTCACCATGTCTAGTTTTGTGGAAATTTTCTTGCTATTTGTTAATGGTCCATGAGCAAGATTAA 2028 0.3891 NFSKLSEQIKKMTVVEDHKMDEFPRGMRVLAVDDDSTCLMILETMLRRCQYHVLSVNDDPKMVMKGITHGACDYLLKPVRIKEIQNIWQHVVRRKTIDSKEWNKTSYQDNVNADSNERGSVAKGNSDQIGKSSRKRKDEDEDDYEENENGHYNEDSSSHKKPRVVWSVELHRKFVSAVNQLGFEKAVPKKILDLMNVEKLTRENKYRLYLKRINSAANRQANMVVALGTADSSYLRMDSLSGVGHLTSLTGAQQFHNNTFRPFGSGGMAGRLNTSFGVNVHGLPSSETLQLGHAQNLHKSIHDPLKFQPTITCGNQNGIQGISMSTGLDQFQHNKGVSVGVSPIQNISPLIDVQPNLSIPNKLPDLIPKAIMGCSPSPVLDISNNALVLKAESENTQGSGMIYGQTSLASQHSQFSLPLLEQGRCSDIWSNSAAESSGINSYPPSETFQVRNLSCASSITTLSNESHDPLKDMHSQGVFFPNNSGQISNNVAPFQVWNDNNDDSTFHSNIFGNSIDALIDTDGHSSINSTYNRNTDFSFFYPSLMKPDGIMGLSEENTLKQQQEYTLNQNKSQNNRAANNLVSLEEFVSSMTNQELVDWTYLPVFHFLDALNRCQYFMRLGLYLRALTSITFSKSFSPIVNNALSMDVSSGALWSSPCLVLWKFSCYLLMVHEQD 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01500 675 PANTHER TWO-COMPONENT RESPONSE REGULATOR 27 58 IPR045279 GO:0009736
Spst8g01500 675 ProSiteProfiles Response regulatory domain profile. 1 92 IPR001789 GO:0000160
Spst8g01500 675 FunFam Two-component response regulator 157 214 - -
Spst8g01500 675 NCBIfam myb-like DNA-binding domain, SHAQKYF class 161 204 IPR006447 GO:0003677
Spst8g01500 675 SUPERFAMILY CheY-like 25 99 IPR011006 -
Spst8g01500 675 Gene3D - 157 214 - -
Spst8g01500 675 MobiDBLite consensus disorder prediction 108 161 - -
Spst8g01500 675 SUPERFAMILY Homeodomain-like 159 212 IPR009057 -
Spst8g01500 675 Gene3D - 53 150 - -
Spst8g01500 675 MobiDBLite consensus disorder prediction 108 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01500 Spst-Chr8 15642260 15653007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01500 12 334 Response Regulator Gene Family AT2G25180 42.597 8.59e-75 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Spst8g01500 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01500 - K14491 gmx:100777171 811.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01500 8 15642260 15653007 Spst9g00728 9 6233679 6237638 PCT