Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01464 ATGTCAAGCAATGCATTAACTCTCTTTTTCTTGCTTCTTAAAATCTCCTTGTTTCCAGCCCTTTGTGCTCTGAACCAGGAAGGTCTCTCTCTACTTTCATGGCTCTCAACTTTCAATTCCTCTGATTCTGCCGCTGGTTTTTCTTCATGGGATCCAACCCACCGAAATCCATGCAGATGGGACTACATAAAATGTTCCAACGAAGGGTCTGTTTCAGAGATCATAATAACATCCATTGATCTTCATACCACCTTCCCTACACAGCTCCTTTCTTTTGGCAACCTTTCCTCTCTAGTCATCTCAAATGCAAATCTCACTGGTGAGATTCCCAGTTCATTGGGAAACTTGTCATCACTCGTTACTTTGGACCTCAGCTTCAATGCTTTATCAGGAAGCATTCCATCTGAAATAGGAAATTTATACAAGCTGCAGTGGCTATACTTGAATTCAAATTCCTTGCAAGGTGGAATTCCATACCAAATTGGAAACTGTTCAAAGATGAGGCAGCTGGAACTTTTTGATAACCAGCTCTCTGGTTTGATTCCAGGAGAAATAGGCCAGCTGACTGATCTTGAAACGCTTCGGGCCGGTGGAAACCCAGGTATCCATGGTGAAATTCCAATGCAGATATCAAACTGCAAGGCTCTAGTTTATCTAGGCCTTGCTGACACTGGCATATCAGGGGAGATTCCACCAACTATAGGAGAATTAACGAGTCTCAAGACACTTCAAATCTACACTGCACACCTCACAGGTTACATCCCACCAGAGATTCAAAACTGCTCAGCCTTGGAAGAGTTGTTTCTCTATGAAAATCAACTTTCTGGAAATATTCCTTCTGAACTGGGTTCCATGAAGAACCTCAGGAAAGTACTTCTGTGGCAGAATAATTTTACTGGGACAATTCCAGAAAGTCTGGGGAACTGTACAAGCCTGAGAGTTATAGATTTTTCTATGAACTCTTTGGTTGGTGAACTTCCTGTGAGTCTCAGTAGTCTAATCTTATTGGAAGAGCTTCTTCTGTCTAATAATAACATTTCTGGAACGATACCTTCCTATATTGGGAACTTCTCCAGTCTGAAGCAACTGGAATTGGATAATAATAGATTCTCTGGGGAGATTCCACATGTCTTGGGGCAGCTGAAGGAACTCACCTTGTTCTATGCCTGGCAGAATCAGCTCCACGGAAGCATACCAACAGAACTCTCCAACTGTGAGAAACTCCAAGCACTTGATCTTTCACATAATTTTCTCAGTGGGTCCATTCCAAGTTCACTATTTCATCTAGAGAATTTAACTCAGTTGTTGTTGTTATCAAATAGACTTTCGGGTCAAATTCCTCCAGATATTGGCAGTTGCACCAGCTTGATCAGGCTAAGGCTGGGATCAAACAACTTCACAGGTCAAATTCCACCAGAAATTGGATTTTTAAGAAGTTTGAGCTTTCTTGAATTATCGGATAATTTATTCAGTGGAGATATACCCTTTGAGATAGGTCATTGTGCTAAGCTAGAGATGCTTGACTTTCACAGCAATGAGTTGCAAGGAGCAATTCCTTCCTCATTGGAATTATTAGTTGGTGTTAATGTCTTAGATTTTTCTGGAAACAGAATAACTGGCACCATCCCTGAAAATTTAGGCAAGCTAGAATCTCTAAATAAGTTGATACTCACCGGAAACCAAATCACTGGTTTGATCCCTCAGTCACTGGGCTTTTGTAAGGATTTACAGTTGCTTGACATAAGCAACAATAGGATCAGTGGTTCCATTCCTGATGAGATTGGTCACTTGCAAGAATTAGATATCCTCTTGAACTTGAGTTGGAATTCTTTAACAGGCCCTATCCCAGAGACCTTCTCAAATCTCTCCAGACTTTCCAACTTGGACCTCTCTCACAACAAGCTCAGAGGTAGTCTTAGGGTACTGGGAACTCTTGACAATCTAGTTTCTCTTAATGTCTCCTACAACAGTTTTTCTGGTTCTCTTCCAGATACAAAGTTCTTCAGGGATCTCCCCCCTGCTGCATTTGCTGGCAACCCTGACCTATGTATTACCAAGTGTCAAGAAAGTGGACATCGCCAACGAATCAAGTCAATAAGAAACATTATCTTATATACCTTCCTTGGTGTTATTTTCACTTCTGGGTTTGTTACTTTTGGAGTAATCTTGGCTCTGAAAATTCACGGGGGCACTACTTTTGACAGTGAAATGCAATGGGCTTTTACTCCATTTCAAAAACTCAACTTTTCCATCAATGACATCATCCCAAAGTTATCAGATTCAAACATTGTAGGTAAGGGCTGCTCAGGAGTTGTTTACCGGGTGGAGACTCCAATGAACCAGGTTGTTGCAGTGAAGAAGCTGTGGCCACAAAAGAATGATGAGCCACCAGAGAGAGACCTTTTTGCTGCAGAAGTTCACACCCTTGGATCAATAAGGCACAAAAATATAGTGAGACTTTTAGGATGCTACAACAATGGAAGAACAAGATTGCTCTTATTTGATTACATATGCAATGGGAGTTTGTCTGGATTGCTCCATGAAAATAGTTTGTTCTTGGACTGGGATGCAAGATATAAGATCATTCTAGGAGCAGCTCATGGATTAGAATATCTTCATCATGATTGTATCCCTCCAATCATTCATAGAGACATCAAGGCTAACAACATCTTGATAGGTCCACAATATGAAGCTTTTCTTGCAGATTTTGGCCTTGCAAAACTTGTTGGTTCCTCTGATTATTCCGGAGCTTCTGCTATAGTCGCAGGTTCTTACGGATACATAGCTCCTGAATATGGATACAGTTTAAGGATCACAGAGATGAGTGATGTGTACAGCTTTGGCGTAGTGCTAATTGAGGTCTTAACAGGAATGGAGCCAATAGACACAAGGATTCCAGAAGGTTCCCACATTGTCCCATGGGTTATCAGAGAAATCCGAGAGAAGAAAAGAGAATTCGCATCATTTCTGGACCAGAAACTAGCAGTGCAGTGTGGAACACAAATCCCTGAGATGCTTCAAGTGCTAGGGGTGGCTCTCCTCTGTGTGAATCCATCCCCAGATGAAAGACCTACAATGAAAGATGTAACAGCAATGCTGAAGGAGATCAGACACGAAAATGTGGATTTTGATTTTGAGAAGACAAAGCTTCTACATAAAGGAGTTGTCAACAATCCAAAAGGTGCAATTCAGTGTCCAAGCTTCTCTAGATCTTGTAGACCTCTGACTGAATCACCATCTTCTTCAGTGTCACCAAATTAA 3261 0.4137 MSSNALTLFFLLLKISLFPALCALNQEGLSLLSWLSTFNSSDSAAGFSSWDPTHRNPCRWDYIKCSNEGSVSEIIITSIDLHTTFPTQLLSFGNLSSLVISNANLTGEIPSSLGNLSSLVTLDLSFNALSGSIPSEIGNLYKLQWLYLNSNSLQGGIPYQIGNCSKMRQLELFDNQLSGLIPGEIGQLTDLETLRAGGNPGIHGEIPMQISNCKALVYLGLADTGISGEIPPTIGELTSLKTLQIYTAHLTGYIPPEIQNCSALEELFLYENQLSGNIPSELGSMKNLRKVLLWQNNFTGTIPESLGNCTSLRVIDFSMNSLVGELPVSLSSLILLEELLLSNNNISGTIPSYIGNFSSLKQLELDNNRFSGEIPHVLGQLKELTLFYAWQNQLHGSIPTELSNCEKLQALDLSHNFLSGSIPSSLFHLENLTQLLLLSNRLSGQIPPDIGSCTSLIRLRLGSNNFTGQIPPEIGFLRSLSFLELSDNLFSGDIPFEIGHCAKLEMLDFHSNELQGAIPSSLELLVGVNVLDFSGNRITGTIPENLGKLESLNKLILTGNQITGLIPQSLGFCKDLQLLDISNNRISGSIPDEIGHLQELDILLNLSWNSLTGPIPETFSNLSRLSNLDLSHNKLRGSLRVLGTLDNLVSLNVSYNSFSGSLPDTKFFRDLPPAAFAGNPDLCITKCQESGHRQRIKSIRNIILYTFLGVIFTSGFVTFGVILALKIHGGTTFDSEMQWAFTPFQKLNFSINDIIPKLSDSNIVGKGCSGVVYRVETPMNQVVAVKKLWPQKNDEPPERDLFAAEVHTLGSIRHKNIVRLLGCYNNGRTRLLLFDYICNGSLSGLLHENSLFLDWDARYKIILGAAHGLEYLHHDCIPPIIHRDIKANNILIGPQYEAFLADFGLAKLVGSSDYSGASAIVAGSYGYIAPEYGYSLRITEMSDVYSFGVVLIEVLTGMEPIDTRIPEGSHIVPWVIREIREKKREFASFLDQKLAVQCGTQIPEMLQVLGVALLCVNPSPDERPTMKDVTAMLKEIRHENVDFDFEKTKLLHKGVVNNPKGAIQCPSFSRSCRPLTESPSSSVSPN 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01464 1086 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 200 325 - -
Spst8g01464 1086 SUPERFAMILY L domain-like 423 682 - -
Spst8g01464 1086 Gene3D Ribonuclease Inhibitor 24 181 IPR032675 -
Spst8g01464 1086 SUPERFAMILY RNI-like 81 395 - -
Spst8g01464 1086 Gene3D Transferase(Phosphotransferase) domain 1 837 1054 - -
Spst8g01464 1086 SMART LRR_typ_2 333 356 IPR003591 -
Spst8g01464 1086 SMART LRR_typ_2 140 164 IPR003591 -
Spst8g01464 1086 SMART LRR_typ_2 357 381 IPR003591 -
Spst8g01464 1086 SMART LRR_typ_2 549 572 IPR003591 -
Spst8g01464 1086 SMART LRR_typ_2 429 453 IPR003591 -
Spst8g01464 1086 SMART LRR_typ_2 645 678 IPR003591 -
Spst8g01464 1086 SMART LRR_typ_2 116 139 IPR003591 -
Spst8g01464 1086 SMART LRR_typ_2 285 309 IPR003591 -
Spst8g01464 1086 SMART LRR_typ_2 477 501 IPR003591 -
Spst8g01464 1086 Gene3D Phosphorylase Kinase; domain 1 736 836 - -
Spst8g01464 1086 ProSiteProfiles Leucine-rich repeat profile. 575 597 IPR001611 GO:0005515
Spst8g01464 1086 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 24 199 - -
Spst8g01464 1086 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 407 691 - -
Spst8g01464 1086 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 837 1051 - -
Spst8g01464 1086 SUPERFAMILY Protein kinase-like (PK-like) 742 1033 IPR011009 -
Spst8g01464 1086 SMART serkin_6 758 1033 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g01464 1086 Pfam Protein kinase domain 761 1030 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g01464 1086 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Spst8g01464 1086 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 286 1035 - -
Spst8g01464 1086 Pfam Leucine Rich Repeat 407 429 IPR001611 GO:0005515
Spst8g01464 1086 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515
Spst8g01464 1086 Pfam Leucine rich repeat 287 346 IPR001611 GO:0005515
Spst8g01464 1086 Pfam Leucine rich repeat 551 611 IPR001611 GO:0005515
Spst8g01464 1086 ProSitePatterns Serine/Threonine protein kinases active-site signature. 880 892 IPR008271 GO:0004672|GO:0006468
Spst8g01464 1086 ProSiteProfiles Leucine-rich repeat profile. 407 429 IPR001611 GO:0005515
Spst8g01464 1086 PRINTS Leucine-rich repeat signature 622 635 - -
Spst8g01464 1086 PRINTS Leucine-rich repeat signature 408 421 - -
Spst8g01464 1086 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 734 836 - -
Spst8g01464 1086 Gene3D Ribonuclease Inhibitor 182 277 IPR032675 -
Spst8g01464 1086 Gene3D Ribonuclease Inhibitor 278 377 IPR032675 -
Spst8g01464 1086 ProSitePatterns Protein kinases ATP-binding region signature. 764 787 IPR017441 GO:0005524
Spst8g01464 1086 Gene3D Ribonuclease Inhibitor 392 692 IPR032675 -
Spst8g01464 1086 ProSiteProfiles Protein kinase domain profile. 758 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01464 Spst-Chr8 13787323 13790877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01464 23 1071 Receptor kinase-like Gene Family AT5G56040 46.895 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst8g01464 Pkinase 1.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01464 - - gmx:100814382 1929.07