Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01445 ATGAAAACACCCAGAAATGTGGAAGATGAACATTACATGAACTTCCGATCAAAACGACAATACCGTGTGGGGACTCACTCCGAACAAACTAAAAGGAATAAAAATCACTCGCCTTCTTATCAAAACCAAGCATTAGCAGAGCACACAGAGACAATGGATTCTTCTGAGACCCCTTATGCATCCCAAGATAAGGCAGATGTTGTTTTCAACCCAAAATATGATTTAACTCTTGAAAATATTCAAGAACTGTTTTTAACTTTGGTGTGGGGTGAAGGATTGATGCCGCCTTGGGTTTCTATTGAGAATAAACATCTTATTACCAAGGTGGTTATGCTCTATATACCTGGCCTAGACCAAGATATGTTCTTGTTGCGGTCTACCCTGCTTCCCAGTTTACGAAAATTCTGTGACAAAACAAAGTCTATCCTATCTCATGGAGTACGAGATAAAATGCAGCCAATAGATGAACTCCTGACATGTCGTGTAAAAATAAGGGACAATGATAGTTCAGATATGGAAAAACCTGCTCTGACATCTCATCAAGAAGAATGTGACACAGACGGGCCATCATTTACAGAGCTTACAAAAGATATACCTTTCCCTGTTACATTCTATACACTGACTGAGCAAGAACGGGAAGATCATGGATATTCTCATAGTAAACCAGGTTTTCTTTCTACTATGCCTGCACCTTCAGGATCTCCTTTTTATGAGATGTTGGCACTTGATTGTGAGATGTGCCTAACGAGTGAAGGTTTCGAGCTGGCAAGAATTACTCTAGTGGACATCAAAGGACAGGCATGCACTGAATTTGTTTTGCTAGATAAATTGGTTAAACCATCAAACCCCATCATTGACTACTGCACAAGATATAGTGGAATAACGCCTGAGATGTTAGATGGGGTGACAACAAGTCTAAAAGACATTCAGGAAGAGTTCTTAAAGTTTGTTTGCAAGGAGACTATCCTTGTTGGACATTCCATGGAAAACGATTTAAGAGTATTGAAAATATCTCATGAAGTAGTCATGGACACAGCAGTGTTATACGGAGATCCCCGAGGAGCATTTTATAAAAGTTCTTTACGGTCTCTTGCTAAGCATAATCTCGCAAGGACGATACAACAATCAGAGAATGGGCATGACAGCATTGAAGATGCTAGAGCTGCCCTAGATTTAGCACTATTGATGATCAGATATGGCAAGTAG 1206 0.3988 MKTPRNVEDEHYMNFRSKRQYRVGTHSEQTKRNKNHSPSYQNQALAEHTETMDSSETPYASQDKADVVFNPKYDLTLENIQELFLTLVWGEGLMPPWVSIENKHLITKVVMLYIPGLDQDMFLLRSTLLPSLRKFCDKTKSILSHGVRDKMQPIDELLTCRVKIRDNDSSDMEKPALTSHQEECDTDGPSFTELTKDIPFPVTFYTLTEQEREDHGYSHSKPGFLSTMPAPSGSPFYEMLALDCEMCLTSEGFELARITLVDIKGQACTEFVLLDKLVKPSNPIIDYCTRYSGITPEMLDGVTTSLKDIQEEFLKFVCKETILVGHSMENDLRVLKISHEVVMDTAVLYGDPRGAFYKSSLRSLAKHNLARTIQQSENGHDSIEDARAALDLALLMIRYGK 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01445 401 SMART exoiiiendus 238 401 IPR013520 -
Spst8g01445 401 Pfam Exonuclease 241 392 IPR013520 -
Spst8g01445 401 FunFam RNA exonuclease NEF-sp 236 401 - -
Spst8g01445 401 Gene3D - 237 401 IPR036397 GO:0003676
Spst8g01445 401 SUPERFAMILY Ribonuclease H-like 239 394 IPR012337 -
Spst8g01445 401 MobiDBLite consensus disorder prediction 18 39 - -
Spst8g01445 401 CDD REX1_like 240 384 IPR034922 -
Spst8g01445 401 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 25 400 IPR047021 GO:0004527
Spst8g01445 401 MobiDBLite consensus disorder prediction 18 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01445 Spst-Chr8 13617248 13623252 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01445 205 392 C2H2 Transcription Factor Family AT2G48100 29.412 4.57e-08 52.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01445 8 13617248 13623252 Spst8g01445 8 13617248 13623252 ECH