Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01441 ATGGACAATTCTACTCCACCTGCTCAGAACATTCCGAATAAGTATCGTGTTAACCACTGGAAGGAAGCTGAGGATGAAAAGCTAAGCCAACTTGTTCAAGAACATGGTCCCCAAGACTGGAATTCAATTGCTCAACATATAGAAGGACGATCTGGAAAAAGTTGCAGATTAAGGTGGCGGAATCATCTTGATCCTGGAGTTAACAGAAGCCCTTTCACAAAAGAAGAAGAGGAGAGGTTAATTGCAGCTCATGAGGCTTATGGGGCAAAATGGGCAACCATAGCCAAACTCTTCCAGGGGAGAACCGATAATGCCTTGAAAAATCATTGGCACGTTCTGATCGCACGAAAGCGAAAGGAAGCCAACAATATTGAAACCTTGCAACACCTGATTAACGCTTCAAACTCTTCTTCTACCACCACTGCTTCTCACTATGGACCATTCTTTGGTATGAGGAACTTCAACGCTGCACAAAGGGCCCTTGCACCAGTCTGTCCCAATGGTTCGTTCAACCCTATGAACTTTGGACTGTTACCATCCTTCTCAGACTCTTTTCCTGGGAATGAAAGGAGTTATCCTCTTGGGCTGTTCAATAGTGCTGCTGGTGATGCAATGATGAAAACCACCTTTTTTCATAGCTCATCATCAGCATTCACTAAGTTTAAGGGTTCTTCTTCCTCGAATAATAAAGAGGAAGCGCATGATGATGGATCCGAAGATGTTCCCTTCTATGATTTTCTTGGTGTCGGTGATGCCAATGAGTGA 765 0.4392 MDNSTPPAQNIPNKYRVNHWKEAEDEKLSQLVQEHGPQDWNSIAQHIEGRSGKSCRLRWRNHLDPGVNRSPFTKEEEERLIAAHEAYGAKWATIAKLFQGRTDNALKNHWHVLIARKRKEANNIETLQHLINASNSSSTTTASHYGPFFGMRNFNAAQRALAPVCPNGSFNPMNFGLLPSFSDSFPGNERSYPLGLFNSAAGDAMMKTTFFHSSSSAFTKFKGSSSSNNKEEAHDDGSEDVPFYDFLGVGDANE 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01441 254 PANTHER MYB PROTEIN-RELATED 19 144 - -
Spst8g01441 254 ProSiteProfiles Myb-like domain profile. 20 63 IPR001005 -
Spst8g01441 254 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Spst8g01441 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 63 IPR017930 -
Spst8g01441 254 CDD SANT 20 63 IPR001005 -
Spst8g01441 254 Gene3D - 18 68 - -
Spst8g01441 254 SUPERFAMILY Homeodomain-like 16 110 IPR009057 -
Spst8g01441 254 MobiDBLite consensus disorder prediction 222 244 - -
Spst8g01441 254 Pfam Myb-like DNA-binding domain 20 80 - -
Spst8g01441 254 Gene3D - 70 142 - -
Spst8g01441 254 CDD SANT 71 114 IPR001005 -
Spst8g01441 254 SMART sant 68 116 IPR001005 -
Spst8g01441 254 SMART sant 16 65 IPR001005 -
Spst8g01441 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Spst8g01441 254 MobiDBLite consensus disorder prediction 227 241 - -
Spst8g01441 254 FunFam MYB transcription factor 18 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01441 Spst-Chr8 13602933 13604434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01441 1 252 MYB Transcription Factor Family AT4G33450 38.376 2.18e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst8g01441 Myb_DNA-bind_6 6.9e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01441 K09422 - gmx:102660725 243.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01441 8 13602933 13604434 Spst8g01441 8 13602933 13604434 ECH