Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01420 ATGGGACTGAGGGTGCTTACACAGATGCAAGTGACCCTGCTGCTGATCATTGCGTTAACAAGAACAGGAACTGAAGCTGCCGGGCAAGCCCTGTCCGGCTGCCCTGATTCCTGCGGAAGTGTTTCAATTCCATACCCCTTTGGCGTAGGCGTGTCAAAAGTCACGGGTAAGGACTGTTACATGGAGAAACACTTGAATCTCACATGCAAAGAATCCATTCTATACGCAGGTAACGTTCAAATTCTGAACATATCCCTCCTAGGTCAATTGGAGATGAATTTTTTCGTCTCCAGTATCTGCAAGAGCAACATTTCTAAAGGAAACGGAGAAGCCAACTCACCCACAATCACAACTGCATCCTTCACCATATCCAGCACGGACAATAAGTTCGTGAGTGTAGGCTGCGACACGTACGGGTATCTCAACAACTACATAAACAATGTGAAATACTCAACGGGGTGCTTGACAAGATGTAACGATGAGAATCAAGTGAACATCCAAAGCATGCAGACAAGTAAAGGGGAGTGTTCGGGGATAGGGTGCTGCCAGGTGGATATACCTCCTGGAATGACGAACATTAGTATACAAGCCTTCTCCTTTAAAAATTTCAGTTACTCTTCCAATCTCAACAGCTGCAGCTCTTCGTTTGTGGTGAAAAATGGGAACTACACTTTCTCGCTGGATGATTTGAAAAAACTTCCATTCGATAAGGCTCCCATGGTCGTTGATTGGAGGGTTGGAAATGAAGCGTGTAATGCGTCCAAGGATAAAAGTAACTATGCGTGCTCGAATAACAGCGACTGCGAGGACCCACCCTCCGCCAATGGAAATGGCTACCGATGCAAATGTAAAGCAGGGTTTGAGGGCAACCCTTACCAAGGTTGCACAGATTATTGTCGTGAAACTCCCGGTTCTTTTGAATGTTTCTGTCCCGATGGACTCATCGGAGATGGAACAATAAAAGGCGGAGGATGTCGACAAAAGCCTCGGCCTGATCTATTTGCCAAGATCGTCATTGGCGCAGGCGCAGGATTAATCGCTCTCTTTATTGGGGTTTCTTGGCTATACTTGATGTACCAGAAAAGAAAACTCCTCAAATTAAAGGAGAAGTTCTTTCAGCAGAATGGGGGCATAATTCTCAGACAGCAACTCTCTACAAGACAAGACTCCTCTCAATCCACTACAATTTTCAGTGCCGAGCAACTTAAGAGAGCCACCAATGATTTTGATGAGAACTTAATCATCGGTAAAGGAGGTTTTGGTACAGTTTTCAAAGGAGTTCTCTCAAATAATAATGTTGTTGCTATAAAAAAGTCCAAAATAGTGGATCAGAGCCAGGTGGAGCAGTTCATTAATGAGGTCATTATACTGTCACAAATTAATCACAGGAATGTGGTCAAACTCTTGGGTTGTTGTCTAGAGACAGAAGTTCCTTTACTGGTCTATGAATTTGTTAATCTTGGAACCCTTTTTGATTATGTACATAATCAAGATCAGAAGGCTAATGTGTGTTGGAAAACGCGTCTAAGGATTGCCACGGAGGCAGCTGCAGCTCTGGCTTATCTACACTCAGCAGCTTCCATACCCATCATCCACAGAGATGTGAAGACTGCCAACATACTCTTAGATGACACTTACACTGCCAAAGTGTCTGACTTCGGAGCTTCAAGATTGGTTCCACTTGACCAAACTGAAATAGCCACAATTGTGCAAGGAACCTTTGGCTATTTAGACCCAGAGTACATGCAATCAAGCCAATTGACCGAAAAAAGTGATGTCTATAGCTTCGGGGTAGTGCTTGTAGAACTGCTAACAGGGGAGAAACCTTTCTCCTTTGACAGGGCAGAAGAGAATCGAAGTATTACAGTTCACTTTCTATGCAGCTTGAAAGAGGATCGTCTGTTTGAAATTCTTCAGATTGGTATTTTGAATGAAGAAAATAAGCAGGAGATTATGGAGGTTGCTGTTCTTGCTGCCAGGTGCTTGAGACTTAGGGGGGAGGAAAGGCCTAGCATGAAGGAAGTGGCAATGGAATTGGAGGGAATAAGGCTTATGGAGAAACATCCTTGGATCAACAATACAGGCCAAAATTTTGAGGAGAGTCAATACTTGCTTGGTGAGGCACAAAGCACTCGTGAACATGGTGACAGTAGTAGCCAACAAAATACTGGATATGATAGCTTGAGACAACTCGAGTTAATTGACTTCGGTAAAGGAAGATGA 2223 0.4386 MGLRVLTQMQVTLLLIIALTRTGTEAAGQALSGCPDSCGSVSIPYPFGVGVSKVTGKDCYMEKHLNLTCKESILYAGNVQILNISLLGQLEMNFFVSSICKSNISKGNGEANSPTITTASFTISSTDNKFVSVGCDTYGYLNNYINNVKYSTGCLTRCNDENQVNIQSMQTSKGECSGIGCCQVDIPPGMTNISIQAFSFKNFSYSSNLNSCSSSFVVKNGNYTFSLDDLKKLPFDKAPMVVDWRVGNEACNASKDKSNYACSNNSDCEDPPSANGNGYRCKCKAGFEGNPYQGCTDYCRETPGSFECFCPDGLIGDGTIKGGGCRQKPRPDLFAKIVIGAGAGLIALFIGVSWLYLMYQKRKLLKLKEKFFQQNGGIILRQQLSTRQDSSQSTTIFSAEQLKRATNDFDENLIIGKGGFGTVFKGVLSNNNVVAIKKSKIVDQSQVEQFINEVIILSQINHRNVVKLLGCCLETEVPLLVYEFVNLGTLFDYVHNQDQKANVCWKTRLRIATEAAAALAYLHSAASIPIIHRDVKTANILLDDTYTAKVSDFGASRLVPLDQTEIATIVQGTFGYLDPEYMQSSQLTEKSDVYSFGVVLVELLTGEKPFSFDRAEENRSITVHFLCSLKEDRLFEILQIGILNEENKQEIMEVAVLAARCLRLRGEERPSMKEVAMELEGIRLMEKHPWINNTGQNFEESQYLLGEAQSTREHGDSSSQQNTGYDSLRQLELIDFGKGR 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01420 740 Gene3D Phosphorylase Kinase; domain 1 375 484 - -
Spst8g01420 740 FunFam Wall-associated receptor kinase 2 485 702 - -
Spst8g01420 740 Pfam Wall-associated receptor kinase galacturonan-binding 34 88 IPR025287 GO:0030247
Spst8g01420 740 ProSitePatterns Serine/Threonine protein kinases active-site signature. 530 542 IPR008271 GO:0004672|GO:0006468
Spst8g01420 740 ProSiteProfiles Protein kinase domain profile. 409 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g01420 740 FunFam Wall-associated receptor kinase 2 379 484 - -
Spst8g01420 740 ProSitePatterns EGF-like domain signature 2. 281 295 IPR000742 -
Spst8g01420 740 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 28 694 IPR045274 GO:0007166
Spst8g01420 740 Pfam Protein kinase domain 413 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g01420 740 Gene3D Transferase(Phosphotransferase) domain 1 486 700 - -
Spst8g01420 740 SUPERFAMILY Protein kinase-like (PK-like) 388 680 IPR011009 -
Spst8g01420 740 ProSitePatterns Protein kinases ATP-binding region signature. 415 438 IPR017441 GO:0005524
Spst8g01420 740 SMART serkin_6 409 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01420 Spst-Chr8 13385114 13387762 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01420 3 740 Receptor kinase-like Gene Family AT1G21230 42.597 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Spst8g01420 Pkinase 7.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01420 - - gmx:100819535 1027.31