Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01419 ATGGGATGGAAGGCCACGCAGAAGCAACTGACCAGACTGACCGTGGTGTTACTGATGGCGTTAGCAGCTGCCGGGCAAGCCCTGTCCGGCTGCCCTGATTCCTGCGGAAGTGTTTCAATTCCATACCCCTTTGGCGTAGGCGTGTCAAAAGTCACGGGTAAGGACTGTTACATGGAGGAACACTTGAATCTCACATGCAAAGAATCCATTCTATACGCAGGTAACGTTCAAATTCTGAACATATCCCTCCTAGGTCAATTGGAGATGAATTTTTTCGTCTCCAGTATCTGCAAGAGCGACATTTCTAAAGGAAACGCCAACTCACCCACAATCACAACTGCATCCTTCACCATATCCAGCACGGACAACAAGTTCGTGAGTGTAGGCTGCGACACGTACGGGTATCTCAACAACTACATAAACAATGTGAAATACTCAACGGGGTGCTTGACAAGATGTAACGATGAGAATCAAGTGAACATCCAAAGCATGCAGACAAGTAAAGGGGAGTGTTCGGGGATAGGGTGCTGCCAGGTGGATATACCTCCTGGAATGACGAACATTAGTATACAAGCCTTCTCCTTTAAAAATTTCAGTTACTCTTCCAATCTCAACAGCTGCAGCTCTTCGTTTGTGGTGAAAAATGGGAACTACACTTTCTCGCTGGATGATTTGAAAAAACTTCCATTCGATAAGGCTCCCATGGTCGTTCATTGGAGGGTTGGAAATGAAACGTGTTTTGCGTCCAAGGATAAAAGTAACTATGCGTGCTCGAATAACAGCGACTGCGAGGACCCACCCTCCGCCAATGGAAATGGCTACCGATGCAAATGTAAAGCAGGGTTTGAGGGCAACCCTTACCAAGGTTGCACAGACATTTTGGAATGTAAACTTGACAAACACAACTGCACAAGTCAAGATTATTGTCGTGAAACTCCCGGCTCTTTTGAATGTTTCTGTCCCGATGGACTCATCGGAGATGGAACAATAAAAGGCGGAGGATGTCGACAAAAGCCTCGGCCTGATCTATTTGCCAAGATCGACATTGGCGCAGGCGCAGGATTAATCGCTCTCTTTATTGGGGTTTCTTGGCTGTACTTGATGTACCACAAAAGAAAAGTCCTCAAATTAAAGGAGAAATTCTTTCAGCAGAATGGGGGCATCATTCTCAGACAGCAACTCTCTACAAGACAAGACTCCTCTCAATCCACTACAATTTTCAGTGCCGAGCAACTTAAGAGAGCCACCAATGATTTTGATGAGAACTTAATCATCGGTAAAGGAGGTTTTGGTACAGTTTTCAAAGGAGTTCTCTCAAATAATAAGATTGTTGCTATAAAAAAGTCCAAAATAGTGGATCAGAGCCAGGTGGAGCAGTTCATTAATGAGGTCATTATACTGTCACAAATTAATCACAGGAATGTGCTTACCTCGCTCGTGGGAGCACTTGTTCTCTGGGTCTCGGAACTTCGTTGCTATTTTTATGCGTCACTCACTGCTCTTTCATTTTCGCAAACAGGTTTAAGGCATGATTATGGGTAG 1542 0.4481 MGWKATQKQLTRLTVVLLMALAAAGQALSGCPDSCGSVSIPYPFGVGVSKVTGKDCYMEEHLNLTCKESILYAGNVQILNISLLGQLEMNFFVSSICKSDISKGNANSPTITTASFTISSTDNKFVSVGCDTYGYLNNYINNVKYSTGCLTRCNDENQVNIQSMQTSKGECSGIGCCQVDIPPGMTNISIQAFSFKNFSYSSNLNSCSSSFVVKNGNYTFSLDDLKKLPFDKAPMVVHWRVGNETCFASKDKSNYACSNNSDCEDPPSANGNGYRCKCKAGFEGNPYQGCTDILECKLDKHNCTSQDYCRETPGSFECFCPDGLIGDGTIKGGGCRQKPRPDLFAKIDIGAGAGLIALFIGVSWLYLMYHKRKVLKLKEKFFQQNGGIILRQQLSTRQDSSQSTTIFSAEQLKRATNDFDENLIIGKGGFGTVFKGVLSNNKIVAIKKSKIVDQSQVEQFINEVIILSQINHRNVLTSLVGALVLWVSELRCYFYASLTALSFSQTGLRHDYG 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01419 513 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 31 - -
Spst8g01419 513 CDD EGF_CA 292 327 - -
Spst8g01419 513 Pfam Wall-associated receptor kinase galacturonan-binding 31 85 IPR025287 GO:0030247
Spst8g01419 513 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 25 479 IPR045274 GO:0007166
Spst8g01419 513 ProSiteProfiles Protein kinase domain profile. 419 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g01419 513 Gene3D Laminin 244 331 - -
Spst8g01419 513 ProSitePatterns EGF-like domain signature 2. 276 290 IPR000742 -
Spst8g01419 513 Pfam Protein kinase domain 423 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g01419 513 SUPERFAMILY EGF/Laminin 295 329 - -
Spst8g01419 513 ProSitePatterns Protein kinases ATP-binding region signature. 425 448 IPR017441 GO:0005524
Spst8g01419 513 FunFam Fibrillin 2 287 331 - -
Spst8g01419 513 SMART egf_5 245 291 IPR000742 -
Spst8g01419 513 SMART egf_5 295 336 IPR000742 -
Spst8g01419 513 Gene3D Phosphorylase Kinase; domain 1 391 493 - -
Spst8g01419 513 Pfam Calcium-binding EGF domain 292 323 IPR001881 GO:0005509
Spst8g01419 513 SUPERFAMILY Protein kinase-like (PK-like) 398 477 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01419 Spst-Chr8 13367332 13371119 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01419 25 479 Receptor kinase-like Gene Family AT1G21230 37.100 1.73e-87 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Spst8g01419 Pkinase 1.3e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01419 - - gmx:100819535 602.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01419 8 13367332 13371119 Spst9g01368 9 13415623 13419163 PCT