Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01413 ATGGAAGCTGAGGATGGAACTAGCAATGGTGATAACGGTGAACGGGCTGGGTTGGATAGGAGGTCAGATTCTCGAGATGGAGATGATGGGGGGAGAATTCAAGGTGGAAATGAGGTCGCGGGAGGTGAAGAAAGTCAAGGCTTGAAGGATGAAACTATAAATAATGGGGTTGTGATTGAAGTTAAAGATGTTCAGGGTTTGAATAAAGCTGTAGATAATAGGGTGGCAATTAAAGGTGGGAATGGTGTTGCTGAAGGTGAAGAAGTTCGGGGCTTGAAGCAGGAAGCTGTAAATAATTGGGTGACACATGAAGGAGGAAATGGTGTTGCTAAAAGGAAAGAAGTTTGGGGTTTGAAGAATGCAACTGTAAATAATGGAATGGTACTTGAGGGTGGAAATGGTGTTGCTAAAGGTGAAGTTTGGGCCTTGAAGAATGATGTCATGAATAGCAGGGTTGTAATTGCTGATGGGAACGGTGTTTCTGAATACGTTTTGGGCTCAAAGAATGAAGTTATAAATAGTGGGGTGGCAATTGCTGATGCGAATGGTGTTGCTTACAGTGGAGAAGGTCTGGGCTCAAAGAATGAAGCTGTAAATAATGAGGTGGTAATTGCAGATGGGAGTGGTGTTACTAAAGGTGAAGAGGACCGCTTGAAGAATGGAACTGTAGATAATGTAGTGGCAATTGCAGATGGATTTGGTGTTGTTGAAGGGAACTCTGGTGCCATTGAATGTTTTCGAACTTATAAGAGGCGAAAGCATGCAAAATCTACTTCAGAGTTTAAAGTCCAGGAGAACAGCAGGAAACATATGGAAGCTGCTGTGAAAAAACCATGTGATTTAGCTGTAGGCAAGACTTCAAAGGATTATTCACCTGACCATTGGGGGAATGTTGTACTAAAGCATTTATATCATTCATTAGGCAATGATAATGGTGGTATGGAGTGGTGTATTAGGGAAGCACTTATGGTTCGTCCTAAAATTAGTTGTGCCTCTACAATGATGGTTGGTCCTGCGGAAACTTTTAAAATTGACAATAATGGTCAAGAACACTCTTCAGAATTAGAGTGTTTGCTTTATAGATTACAGAGTGAAGCTAATGGGCACAAAAATGCTGTGCATAATGGATTTTCTAGCGAGGCAGATAGCCATGGTGCAACTGAAAGGTGTCAGCATGTGTTCCGCGATATCTTAGCCTCTGAGAAGTTCAGTTCATTATGTAAAATACTGCTTGAAAATTTCCAAGAAATGAAACCCGAAACTGTATTTGACTTTAGTGTGATAAACTCAAGGATGAAAGAGCAAGCTTATGAACATTCATCTACACTTTTCTTATCAGATCTTCAGCAGGGAAATGGATGTGGCAATATAAGGTTTGCAAAAGAGAAAAAAAAAAGCAAATGGTTATGTGGAGTGGGGAGGGTGATACAGGAATCATGCAGTGGAGCCATAGCTGAGAGAGAGAAAATTGGTAAACGTAGGGAGGTTTGGCAAAAGCTTCAAAATACTGGCCATCAGATTGTTGCTGTAGCCAGGAGCCTCTCGAACATGTCAAAAGCTTCTTTCTATGAACAGTTGGGAATTTCAGCGCACAGATCATTTGAAGAGGAAAAGCTAGTGGAATCAATCTCTCACATGAAACCAGAGCAGACAGTAGAATGTGTTACATTTAAAGTTGGCACTTGCAAGCATTGTGAAGACAAAGCAGAAGGGGCAGACTGTTTGGTTTGTGATTCATGTGAAGAGATGTATCATCTGTCCTGTATTGAGCCTGCTGTGAAAGAAATACCCCGCAAAAGCTGGTTCTGTTCCAATTGTACTGCTGGGGGAATTGGATGTCAACATGAGAACTGTGTGGTGTGTGAACGTTTGAATGTCCCAAAGGCACTGGACCACATTGTTGGCCAGGAAAGTATCCCTACAATGGATGAAAAACTGAATGAGTTGAAGGAGAATTCAAATTGTACTTGTGATGGGATTCAGGTTTCCTCAGGTGGATACACATCTGACTGCAAAATTTGTAAAATGGTGGTGCGTCATGGAAAAATAAAAATCTGTGGTCACTCATTTTGCCCCAGTAAATACTACCATGTAAGGTGTCTGTCAAGTAAGCAGCTAAAGTCATATGGTCACTGTTGGTATTGCCCTTCTTGTATATGCCAAGTCTGCCTCACTGACCAAGATGATGATAAGATTGTACTCTGTGATGGCTGTGATAATGCATACCATATCTACTGTATGAAACCTCCTCTAAATTCTATCCCGAAAGGGAAATGGTTCTGCATAAAATGTGATGCAGGGATACAAGCAATACGCCAGGCAAGAAAGACTTATGAGAGCAAAAAAGGGAAAATTGGTCAGAATGATTCAAAGCCAAATGAAGATATTGACAAGAAATGGAACAAGAAGCGAGGACGGGAATCCGACAAAGTTGGAGGAATGGACATGCTTATAACTGCAGCAAATACTCTGAATTCTGAGGACATTAAGCAATCCAGGTTGAGTCAGAGAGAACATTGA 2520 0.4131 MEAEDGTSNGDNGERAGLDRRSDSRDGDDGGRIQGGNEVAGGEESQGLKDETINNGVVIEVKDVQGLNKAVDNRVAIKGGNGVAEGEEVRGLKQEAVNNWVTHEGGNGVAKRKEVWGLKNATVNNGMVLEGGNGVAKGEVWALKNDVMNSRVVIADGNGVSEYVLGSKNEVINSGVAIADANGVAYSGEGLGSKNEAVNNEVVIADGSGVTKGEEDRLKNGTVDNVVAIADGFGVVEGNSGAIECFRTYKRRKHAKSTSEFKVQENSRKHMEAAVKKPCDLAVGKTSKDYSPDHWGNVVLKHLYHSLGNDNGGMEWCIREALMVRPKISCASTMMVGPAETFKIDNNGQEHSSELECLLYRLQSEANGHKNAVHNGFSSEADSHGATERCQHVFRDILASEKFSSLCKILLENFQEMKPETVFDFSVINSRMKEQAYEHSSTLFLSDLQQGNGCGNIRFAKEKKKSKWLCGVGRVIQESCSGAIAEREKIGKRREVWQKLQNTGHQIVAVARSLSNMSKASFYEQLGISAHRSFEEEKLVESISHMKPEQTVECVTFKVGTCKHCEDKAEGADCLVCDSCEEMYHLSCIEPAVKEIPRKSWFCSNCTAGGIGCQHENCVVCERLNVPKALDHIVGQESIPTMDEKLNELKENSNCTCDGIQVSSGGYTSDCKICKMVVRHGKIKICGHSFCPSKYYHVRCLSSKQLKSYGHCWYCPSCICQVCLTDQDDDKIVLCDGCDNAYHIYCMKPPLNSIPKGKWFCIKCDAGIQAIRQARKTYESKKGKIGQNDSKPNEDIDKKWNKKRGRESDKVGGMDMLITAANTLNSEDIKQSRLSQREH 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01413 839 CDD PHD1_KDM5A_like 719 764 - -
Spst8g01413 839 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 495 609 IPR013083 -
Spst8g01413 839 MobiDBLite consensus disorder prediction 779 811 - -
Spst8g01413 839 SMART PHD_3 561 607 IPR001965 -
Spst8g01413 839 SMART PHD_3 670 719 IPR001965 -
Spst8g01413 839 SMART PHD_3 720 765 IPR001965 -
Spst8g01413 839 ProSiteProfiles Zinc finger PHD-type profile. 559 609 IPR019787 -
Spst8g01413 839 MobiDBLite consensus disorder prediction 779 813 - -
Spst8g01413 839 Pfam PHD-finger 562 607 IPR019787 -
Spst8g01413 839 Pfam PHD-finger 719 765 IPR019787 -
Spst8g01413 839 MobiDBLite consensus disorder prediction 1 51 - -
Spst8g01413 839 PANTHER OS02G0192300 PROTEIN 542 638 - -
Spst8g01413 839 MobiDBLite consensus disorder prediction 14 32 - -
Spst8g01413 839 ProSiteProfiles Zinc finger PHD-type profile. 717 767 IPR019787 -
Spst8g01413 839 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 663 770 IPR013083 -
Spst8g01413 839 SUPERFAMILY FYVE/PHD zinc finger 554 607 IPR011011 -
Spst8g01413 839 SUPERFAMILY FYVE/PHD zinc finger 719 771 IPR011011 -
Spst8g01413 839 ProSitePatterns Zinc finger PHD-type signature. 562 606 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01413 Spst-Chr8 13299589 13323620 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01413 719 782 C2H2 Transcription Factor Family AT3G01460 48.438 2.18e-14 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Spst8g01413 PHD 1.2e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01413 - - gmx:100786712 1137.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01413 8 13299589 13323620 Spst8g01413 8 13299589 13323620 ECH
Spst8g01413 8 13299589 13323620 Spst9g01359 9 13294967 13301996 PCT