Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01406 ATGCTCTGTTTGACTCAATTAGTGATTTCATTTGCAGTTGCCAGGAGTTCATGCAAACGTTCAAGAGCCTCACTAGTGTGGACACTCTGTAGCAAAAATTCTTCTGAAAATGACAGGAACTCACGTCATTATCAAAAGGTTTTGCCTCAATTGTTTCCATGGAAAAGAGCAACATTTGCTTCAAATTTCAATAGTGGTTCCTTATCTGCAATCAGCAAAAAATTGCTTCAGTTGAGAAAGAGGGATACTGTTTACACTAGGTCAAAACATGGGTTTTCGCTTTGGAAGTCTAGAGTTTTAGGCGTTGGTGGGTGTAGTTTAAAATGGTCCAAATCCATTGAGAAGAACTCAAAGCAAGCTAACGAGGAAGCTACACTTGCTGTTGCTGCAGTAGAGAGGAAGAAGAGAGAGCAGAAAAATGCGGTTTGCATCAGTTCTAAGTCAAAGAGAGAGCGTATATTTCGTATTGGTTTAGTTCGATACAGAATGGATCCCTCAAGGAGGACACTTCAGAGGATTTCAGATGCCGATGAATCCCAGTCCTCTGCATCTACCAGTTCAGGTTTGGCTTCCAAAAGAGCTTACATTCCACGGAGATTAGTGATTGGAAATGATGAATATGTACGAATTGGTAATGGTAACCAGCTTATCAGAGACCCAAAGAAACGAACTCGAAAATTGGCAAATGAAAAGGTTAGATGGAGCTTGCACACTGCCCGACAGCGGTTGGCTCGAAAGCAGAAGTATTGTCAGTTTTATACCAGATTTGGGAAATGTAAAAAGGATGGAGGGAAGTGTCCTTATATTCATGATCCCTCAAAAATTGCTGTCTGTACCAAGTTCCTGAATGGTTTATGCTCTACTCCCAACTGCAAATTAACACACCAGGTTATTCCAGAGAGAATGCCAGATTGTTCTTATTTTTTGCAAGGCCTATGTTCAAACAGCAATTGTCCATATAGACATGTCAATGTGAACCCCAAGGCATCTATTTGTGAAGGATTTCTGAGGGGTTATTGTGCTGATGGGAATGAGTGTCGGAAGAAGCACAGCTATGTCTGTCCTACTTTTGAAGCAACAGGAACCTGTACTGAAGGAGCCAAATGCAAACTTCATCACCCCAAAAAACAAAGCAAGGGAAAGAAAAGGAAGAGATCTGGAGATCAGAAGAACACTAGAGGGCGCTATTTTGGTTCTAATTCTGCTGATGTTTCTGAATCTGGGATGATGGTGGCTCCAAAGCGACATAAACAGAGTGGTGAACTTAAAGAGGAACTTTCTGACTACATCAGCCTTGATGTTGTCAATGAAGAAATCGCAGACACTGCTGATCTATCATTTGATCCAGCAGTTTTCTGTGACACTGATTCATTGGATGATTTTGATGAATTCATTAAACCAGTTCTTCTATTGAAAACAAAGTTAACATCACAATCCCCCAAGTCCCATATCCTCCGAGAAAAGGCCGGAGACTTAGATCGTTTGTTAATCAGGTAA 1497 0.4102 MLCLTQLVISFAVARSSCKRSRASLVWTLCSKNSSENDRNSRHYQKVLPQLFPWKRATFASNFNSGSLSAISKKLLQLRKRDTVYTRSKHGFSLWKSRVLGVGGCSLKWSKSIEKNSKQANEEATLAVAAVERKKREQKNAVCISSKSKRERIFRIGLVRYRMDPSRRTLQRISDADESQSSASTSSGLASKRAYIPRRLVIGNDEYVRIGNGNQLIRDPKKRTRKLANEKVRWSLHTARQRLARKQKYCQFYTRFGKCKKDGGKCPYIHDPSKIAVCTKFLNGLCSTPNCKLTHQVIPERMPDCSYFLQGLCSNSNCPYRHVNVNPKASICEGFLRGYCADGNECRKKHSYVCPTFEATGTCTEGAKCKLHHPKKQSKGKKRKRSGDQKNTRGRYFGSNSADVSESGMMVAPKRHKQSGELKEELSDYISLDVVNEEIADTADLSFDPAVFCDTDSLDDFDEFIKPVLLLKTKLTSQSPKSHILREKAGDLDRLLIR 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01406 498 Coils Coil 121 141 - -
Spst8g01406 498 PANTHER CCCH ZINGC FINGER 13 472 - -
Spst8g01406 498 ProSiteProfiles Zinc finger C3H1-type profile. 299 325 IPR000571 GO:0046872
Spst8g01406 498 SMART c3hfinal6 244 272 IPR000571 GO:0046872
Spst8g01406 498 SMART c3hfinal6 299 324 IPR000571 GO:0046872
Spst8g01406 498 SMART c3hfinal6 353 375 IPR000571 GO:0046872
Spst8g01406 498 SMART c3hfinal6 326 352 IPR000571 GO:0046872
Spst8g01406 498 SMART c3hfinal6 273 297 IPR000571 GO:0046872
Spst8g01406 498 MobiDBLite consensus disorder prediction 392 406 - -
Spst8g01406 498 MobiDBLite consensus disorder prediction 374 389 - -
Spst8g01406 498 FunFam Zinc finger CCCH domain-containing protein 7 327 388 - -
Spst8g01406 498 ProSiteProfiles Zinc finger C3H1-type profile. 244 273 IPR000571 GO:0046872
Spst8g01406 498 FunFam zinc finger CCCH domain-containing protein 3 274 325 - -
Spst8g01406 498 Gene3D - 271 325 - -
Spst8g01406 498 ProSiteProfiles Zinc finger C3H1-type profile. 326 353 IPR000571 GO:0046872
Spst8g01406 498 MobiDBLite consensus disorder prediction 374 420 - -
Spst8g01406 498 Gene3D - 326 389 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst8g01406 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01406 - - vum:124848982 856.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01406 8 13191898 13195986 Spst8g01406 8 13191898 13195986 ECH