Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01404 ATGAAAATGCTGCCACCTTCCGTCGCTGAAGAGGCCGGCCACGGTGGCCGGACGGTGGTCGTGGGAGTGAAGATGGACTCCCACAGCACGGAATTGCTCACTTGGGCTTTGTTCAAAGTGGCTCAGCCCGGTGATGTTGTGCTTGCTCTTCATGTTCTTGGGAATGATGAAATTGTGAATCGAGATGGGAAATCCTCTTTGTTTTCGCTTGTCAAAGCGTTTGACTCTGTGCTTGCCGTTTACGAAGGGTTCTGCAATTTGAAACAGGTGGATCTTAAGTTCAAAATATGTCGGGGTTCAGCAGTGAGGAGAATCCTGGTTCGAGAAGCCAATGCTTATTCTGCAACGCACGTCATAGTTGGAAGTCCTCAAGGTCTTCATAGGATTCGTCCATGTATATCTGTGGCAAGGTACTGTGCTAAGAAGCTACCAAAGGATTGTTGGGTTCTTGCTGTTAATAATGGGAAAATTGTGTTCAGCAGAGATGGTTCACCGGCAATTCGTGCTGACATGAAAGGAGTTGATCAGAACCGCAAAACTAGGGTGCTTTGTTCGATTCACAGGACACTCGGCAAGAGTTCAAGAGTGCTAGATGATGATGGTACCGGGATACATGAAAAAGGTATTGGTAAATTTTCAGATCACAGTTTGGCTAAGGCTTTTCTGGATTCTAAAGAGTTCATTGAGGAGAAGGGTTGCTCAATTTGTTCTTCAACCGCAGCAGTGTTTGATTCATGTTGTAACCATTCAGAAAAAGAGTCTTGTGTTGATGCTTGTGATGAGAACCCTTTGGCAATAGTGCCTGTGCAGACCAATGATTCTACTTCTAAACCAGGCTGGCCACTGCTTCGTAGGACAATTATATCTGACAAGAAATGTTCTGAAAGATCGATGTTTCGACAGATCTCTGTGGTACAATGGGCAATGCAGTTACCTTCTAGAAATCTGTCATATGCTGCACATCTTGACCAAAATACTAACAATTATGGCCCAAATAAGGATCAGTTTTTGGCTCTAGATAGCAAGAGTGGTGCTATTGTTCCAGTGGATGCTGAAATAGGCACTGCCTCTTTGCCTAAACACAATTCAAGAATTCCTAAGGAATTTGAGGGCCTTCACGAGAAATACTCATCCAGTTGCAGATTGTTTAAGTACCAAGAACTTGTTTTGGCAACATCAAATTTCTTGCCTGAAAATTTGATTGGGAAGGGAGGAAGTAGTCAGGTATACAGAGGCTGGCTTCCTGATGGCAAGGAACTGGCTGTTAAGATCTTAAAGCCGTCTGATGATGTTTTGAAGGAGTTTGTTCTAGAGATAGAAATTATCACTACCTTGCATCACAAAAACATTATTTCCCTCCTTGGCTTCTGCTTTGAGGATGGTAATCTTCTTCTGGTCTACGATTTCTTATCAAGAGGAAGCCTTGAAGAGAACATCCATGGTAATAAGAAAAATCCACTTGTGTTTGGTTGGACTGAGAGATACAAGGTGGCAATGGGTGTTGCCGAGGCTTTGGAGTATCTCCATAATACCGAAGGCCAATGGGTGATCCATCGCGATGTAAAATCATCAAATGTTTTGTTATCTGAGGATTTTGAACCCCAGCTCTCTGACTTTGGACTTGCTAAATGGGCATCAACCTCATCATCACATATAATCTGCACAGATGTTGCTGGAACATTTGGTTACATGGCTCCTGAGTACTTCATGTATGGTAAAGTAAATGACAAGATTGATGTCTATGCATTTGGTGTTGTGCTTCTTGAGCTTCTTTCAGGGAGAAAGCCCATAAGTAGTGATTATCCCAAAGGTCAAGAAAGCCTTGTCATGTGGGCAAGTCCAATTTTAAATAGTGGAAAGGTATTACAATTGTTAGATCCTAGTTTGGGTGATAACTATGATCGTGAAGAGATGGAAAGGATGGTCCTGGCAGCTACACTCTGCATCAGACGTGCTCCAAGAGCAAGACCCCAAATGAGCCTTATCTCTAAGCTCCTTGGAGGTGATACTGATGTGATCAAGTGGGCAAGACTAGAAGTTAATGCTTTGGAAGCACCAGAAATGATTGATGATGAAGCTTGCCCACCTTCTAATCTGCAGTCACACCTTAATCTTGCACTGCGTGATGTGGAGGACGACTCCCTCTCCATGTGCAGCGTTGAGCAAAACGTCTCATTGGAGGACTATTTGAGAGGCAGGTGGAGCCCATGTGCTGTGGAAGTTTATAGATGGGTTTTGGATGAGAGGTTGTTTGTGTGCCCTCCTCCTTCCCTTATTGTCCAGGAAACTATGCCTTACGCACTACTCTTTGTCGTTCTGGTGCAAAAACCAAAAGAGGTAAGGGAAAGAAAAAAAGACCTCATTGAGTGCAAAGTTGAAAAGGGTCACGAGAATCCAAAAGACAGAACCTAA 2412 0.4357 MKMLPPSVAEEAGHGGRTVVVGVKMDSHSTELLTWALFKVAQPGDVVLALHVLGNDEIVNRDGKSSLFSLVKAFDSVLAVYEGFCNLKQVDLKFKICRGSAVRRILVREANAYSATHVIVGSPQGLHRIRPCISVARYCAKKLPKDCWVLAVNNGKIVFSRDGSPAIRADMKGVDQNRKTRVLCSIHRTLGKSSRVLDDDGTGIHEKGIGKFSDHSLAKAFLDSKEFIEEKGCSICSSTAAVFDSCCNHSEKESCVDACDENPLAIVPVQTNDSTSKPGWPLLRRTIISDKKCSERSMFRQISVVQWAMQLPSRNLSYAAHLDQNTNNYGPNKDQFLALDSKSGAIVPVDAEIGTASLPKHNSRIPKEFEGLHEKYSSSCRLFKYQELVLATSNFLPENLIGKGGSSQVYRGWLPDGKELAVKILKPSDDVLKEFVLEIEIITTLHHKNIISLLGFCFEDGNLLLVYDFLSRGSLEENIHGNKKNPLVFGWTERYKVAMGVAEALEYLHNTEGQWVIHRDVKSSNVLLSEDFEPQLSDFGLAKWASTSSSHIICTDVAGTFGYMAPEYFMYGKVNDKIDVYAFGVVLLELLSGRKPISSDYPKGQESLVMWASPILNSGKVLQLLDPSLGDNYDREEMERMVLAATLCIRRAPRARPQMSLISKLLGGDTDVIKWARLEVNALEAPEMIDDEACPPSNLQSHLNLALRDVEDDSLSMCSVEQNVSLEDYLRGRWSPCAVEVYRWVLDERLFVCPPPSLIVQETMPYALLFVVLVQKPKEVRERKKDLIECKVEKGHENPKDRT 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01404 803 SMART serkin_6 395 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g01404 803 SUPERFAMILY Protein kinase-like (PK-like) 376 664 IPR011009 -
Spst8g01404 803 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 17 149 - -
Spst8g01404 803 Pfam Universal stress protein family 17 149 IPR006016 -
Spst8g01404 803 Gene3D HUPs 16 153 IPR014729 -
Spst8g01404 803 PANTHER OS08G0249100 PROTEIN 237 677 IPR046958 -
Spst8g01404 803 ProSitePatterns Serine/Threonine protein kinases active-site signature. 516 528 IPR008271 GO:0004672|GO:0006468
Spst8g01404 803 Pfam Protein kinase domain 399 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g01404 803 ProSitePatterns Protein kinases ATP-binding region signature. 401 423 IPR017441 GO:0005524
Spst8g01404 803 Gene3D Transferase(Phosphotransferase) domain 1 470 675 - -
Spst8g01404 803 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 16 153 - -
Spst8g01404 803 CDD USP_Like 18 149 - -
Spst8g01404 803 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 364 469 - -
Spst8g01404 803 FunFam Putative receptor-like serine/threonine-protein kinase 470 682 - -
Spst8g01404 803 ProSiteProfiles Protein kinase domain profile. 395 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g01404 803 Gene3D Phosphorylase Kinase; domain 1 360 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01404 Spst-Chr8 13179162 13186506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01404 356 662 Trihelix Transcription Factor Family AT1G68690 43.590 1.09e-75 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Spst8g01404 Pkinase 8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01404 - - gmx:100305405 1093.18