Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01394 ATGATGCATATTTGTGTTCTTGACTGTTCTTACGCTCCTGAAGGTGACAAATATAAGGTAGCAAAACGATGGGGCCACATTAATATTGTGATGAGGAAATGGTTTGATCAATCTATTGCTCGAAGAGCATGTCTTAATGAGGAGTTCTTCCCTGTTCAGCATGGATCTATATCTTCACATAAAGTGACTAGGGACTTAACAATACAACATAGCCAAGAAAAGAATATTGGGAAATTGCAATCTGCGGCATCCTCAGGTGCTACAGATTCAAATGTGCAAGTTTCCTGCGCTGAGTTTATGGATAGAGATCTAGAAGCTACACAGTCAGAACATATGTCCTCTGCTTTACAAACTCTTATATTTTCTAAGGAGGCAGATGCTGAACCTCCATTGCAGACCTGTGGTGGATTGAACTTTGATGGTGTTGTTGCTGATGATTCTGAATCTGATGATAATGACTTGTACTTATCAGAGTGCAGAATACTCCTAGTTGGTTTTGATGCTATAGAAATGCGGAAGCTAGTTAATATTGTGCGTAGAGGTGGAGGCTCCCGTTATATGTCTTTTAATGACAAATTGACACACATAGTAGTTGGGAATCCTACTGAAATGGAAAAGAAGGATGTGAGGAGTCTTGCTGCTTTAGGTGTAATTTATGTTGTTAAAACCACATGGCTTGAAGATTGTGACCATAAGAAGAAAGAAGTCCCTATTCTTAGGAGACATATTGCATATGATCTACTTCATCCAAAAGGAGCAGTAACAGGGAACACATCTATGGATCACTGTAAAAGCTCCAGCTATCATCAAAGCTCGCATCAGGTGGACTTCGAAATTGTGAAACCAGAATCTTTGGAGAATAGAAAAGAAGAGATAAAAGATTTGGAAATAAATGGTCACACACTCCGTAAAGCAATTGGTAAAACTATGTTGCAAAATCAACCTCCTGATAATAAATTGGGTGCCAAGAGAATGAGCCAACATGACTCCAGTCTTCAATATGCAAAGTCAGCAAACGTTTTTAGAGGGAAACTGTTTTGTTTCTCAAATTTGTTTCCAGAAGAAAAGAGAGGTGAGATTGTTCAATGGATAAGTCAAGGGGGAGGAGAGATAATAAGTAGGCAAACAATACAGATCGCCCACTATACTATTGAGTGTCATGGTGTAACACCCATTTTGACAGGTGATTCCAAGAGTTTGTGTATTTCCAGTCATTGGATACGATCTTCTTTGGAGGCTGGATCCTTGCTGGATGTTGACAGTCACATTCTTTTTTCTCCGCTTCCCTGCCGTGTTCCCTTGCCTGGATTTGAAAGATTCCGATTTTGTGTTTCACAGTATGAGGAGAAAGACAGAAATCTCCTAAGAAATTTGTGTTTTGTTCTAGGAGCTAAATTTGGGGAGAAGTTGACTAAGAAGGTTACGCATTTGTTGTGTAAATTCACCAATGGGCCCAAGTATGAGGGTGCTAAAAAATGGGGGATTCAGTCAGTTACATCGGAATGGATATTTGAATGCGTAAAACAGAATGGAATTGTTGCCATTGATCAATTTTTACCTAAAGAAGTAAGTGGTCAAGACCTAGAGGCAGGAATTTGCACTGTGAGTCAATTTCCTACCCAAGCTGCTCAAATGATAAGTGAAATGCCCTCACAGTTGTCAAGTCAATCACAAACTTTGACAGGGATCCCGAATAAAAATGTCGGTTGTGGAGTTGATAATCATGAGACCAATTTTAAGAAATCAAATATTTATAGCAAAAGGGCAAGGCTTGTGGAAGAACCTTGCCAATCTAACAAAATACCTTCAGCATCAATTTCGGGTAGTCATGCCAATGGAGAGAATTTTTCTCGAGACAATATGCTAATGGACGCTGGGGAGGTTTGTCTTGCTGTTCCTGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGCAGACGAGTAAGGTACAAGAGCTGATTTTTTGTTAG 1968 0.3963 MMHICVLDCSYAPEGDKYKVAKRWGHINIVMRKWFDQSIARRACLNEEFFPVQHGSISSHKVTRDLTIQHSQEKNIGKLQSAASSGATDSNVQVSCAEFMDRDLEATQSEHMSSALQTLIFSKEADAEPPLQTCGGLNFDGVVADDSESDDNDLYLSECRILLVGFDAIEMRKLVNIVRRGGGSRYMSFNDKLTHIVVGNPTEMEKKDVRSLAALGVIYVVKTTWLEDCDHKKKEVPILRRHIAYDLLHPKGAVTGNTSMDHCKSSSYHQSSHQVDFEIVKPESLENRKEEIKDLEINGHTLRKAIGKTMLQNQPPDNKLGAKRMSQHDSSLQYAKSANVFRGKLFCFSNLFPEEKRGEIVQWISQGGGEIISRQTIQIAHYTIECHGVTPILTGDSKSLCISSHWIRSSLEAGSLLDVDSHILFSPLPCRVPLPGFERFRFCVSQYEEKDRNLLRNLCFVLGAKFGEKLTKKVTHLLCKFTNGPKYEGAKKWGIQSVTSEWIFECVKQNGIVAIDQFLPKEVSGQDLEAGICTVSQFPTQAAQMISEMPSQLSSQSQTLTGIPNKNVGCGVDNHETNFKKSNIYSKRARLVEEPCQSNKIPSASISGSHANGENFSRDNMLMDAGEVCLAVPDVAAAIEDLLEQTSKVQELIFC 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01394 655 ProSiteProfiles BRCT domain profile. 336 424 IPR001357 -
Spst8g01394 655 Gene3D BRCT domain 2 55 IPR036420 -
Spst8g01394 655 ProSiteProfiles BRCT domain profile. 437 520 IPR001357 -
Spst8g01394 655 SUPERFAMILY BRCT domain 400 521 IPR036420 -
Spst8g01394 655 Gene3D BRCT domain 142 240 IPR036420 -
Spst8g01394 655 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 12 648 - -
Spst8g01394 655 FunFam Transcription coactivator 134 243 - -
Spst8g01394 655 Gene3D BRCT domain 432 523 IPR036420 -
Spst8g01394 655 Pfam BRCA1 C Terminus (BRCT) domain 153 229 IPR001357 -
Spst8g01394 655 ProSiteProfiles BRCT domain profile. 151 243 IPR001357 -
Spst8g01394 655 FunFam Transcription coactivator 333 430 - -
Spst8g01394 655 Pfam twin BRCT domain 441 502 IPR001357 -
Spst8g01394 655 SUPERFAMILY BRCT domain 339 426 IPR036420 -
Spst8g01394 655 CDD BRCT_TopBP1_rpt2_like 435 510 - -
Spst8g01394 655 Gene3D BRCT domain 333 430 IPR036420 -
Spst8g01394 655 SMART BRCT_7 434 510 IPR001357 -
Spst8g01394 655 SMART BRCT_7 153 233 IPR001357 -
Spst8g01394 655 SMART BRCT_7 338 414 IPR001357 -
Spst8g01394 655 SUPERFAMILY BRCT domain 151 237 IPR036420 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01394 12 651 Core DNA Replication Machinery Family AT1G77320 42.708 7.46e-159 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01394 K10728 - gmx:100804966 1060.06