Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01391 ATGTGCAATCGCGTCATGTCGAGGATTTGCGTGAAGAATCTCCCGAAACATGTTGCGGAGGATGAACTACGGGAATTCTTTTCTGAGAAAGGAATAATCACTGACGTTAAGCTCATGCGTACCAAAGATGGCAAGAGTCGGCAATTTGCGTTTATAGGATATCGAACTGAAAAAGAAGCCCAGGAAGCCATTCGATATTTCAATAATTCTTTCCTTCGCACATCTAAAATTACTTGTGAGGTGGCTCGAAAACTTGGGGATGAAAATCTTCCTCGTCCATGGAGTCGGCATTCGAAGAAGAAAGATGAGAAAGCGGCTGCCCCGGATGTGGGGAAACCTGCTAAAGTTAAGGGACCAGGAGAAAATTTGAAGGGCAGTGTGGATGTTGATGACCCGCAGCTTCAGGATTTTCTTGAGGTCATGCAGCCTCGGGTTAAGTCTAAGATGTGGGCAAATGATACGTCCGTTGTCACCAGTGTTGGCAACAACCAAGCAGTGTCAAATAAGGATAATGAAGTTGCTTCAGTTTCAACTGATGAAAGTGGCTCATTAGAAGATGGGTTTCCAGATATTTCTGAACCTAGCAGTAAGTCACGTGAGCCTGAACCAGATGAAGTCATTTCGGATATGGATTATTTCAAGAGTAGGGTGACAAAAGAGTGGTCTGATTCTGAAAGTAGTGATAAAGATGACGAGGATGGTAATGACAATGATGACAACGATGATAATAGTGGTGTTAGTCAAAATGAAGAAATTTGTGATCCAAGAAATGGTGCTCGTGAGGTAGACCTAGAGGGGAAAGAAGCTACTAGTGGAGATGTCACCCATGGAAAGTCTCAAGTAAATGTGACCCTGGAAGGGGGTCAATTATTGAAAACAGAAGACGAGAAAGGAGCTTTTGAGTCCTGTCGGTTGTTTGTCCGTAATCTGCCATACACGACCACTGAGGAGGAACTGGAAGAACATTTCAGTCACATTGGTAGTGTCTCACAGGTTCATCTAGTTGTTGATAAAGATACAAAACGATCCAAAGGAATAGCATATATTCTGTATACAGCTCCAGAATTTGCAACCAGGGCTCTAAAAGAGTTAGACAATTCAATCTTTCAAGGAAGATTGTTGCATATATTGCCAGCCTTACAAAGACATTCAGAGAATCAAGAGAACAATATTTTGAAGGACCAAAGCTCTAAAACCCTCAAAAAACAGAGAGAGGAAAAAAGGAAAGCAAATGAAGCTAGTGGAGATACTAGAGCATGGAATAGTCTGTTCATGCGCCCTGATACAATCGTGGAAAACATTGCAAGAAAATATGGTGTTAATAAAAGTGATTTACTTGACCGAGAAGCTGATGATCTTGCTGTACGGATTGCTCTGGGAGAGACCCAAGTGATTTCAGAAACAAAAAAGGCATTTAAAAATGCTGGTGTTAATGTGGAGGCCTTGGAGGAACTTGCTAATAATAAAGTAGATGGCTTAAAAAGAAGCAATCATGTGCTTCTAGTGAAGAACTTGCCATATGGTTCTACAGAAAATGAACTTGCAAAGATGTTTGGGAAATTTGGCAGTTTGGATAAAATAATCCTCCCTCCAACAAAGACATTAGCGCTGGTTGTTTTCCTCGAACCAGCAGAAGCTCGGGCAGCCTTTAGAGGTTTAGCCTACAAGCGCTACAAGGATGCTCCATTATACTTGGAGTGGGCTCCTTCCAATATTCTTAGCCAAAGTTCAACATCTAAAAATAATGACATGACTGGTGCAATTGGTGAAAATGATGCCAAGAGGCAGATATTGGAGCAACATGTGGAAAGATTAACAGATGTGGATATTGATCCAGACAGAGTAGAGTCTTTTGGGAATAAGAGAAGGAAAGATAATGCTCGGTCCCTATTTGTCAAGAACCTAAATTTCAAGACTACAGATGAGAGTCTGAGGAAACATTTTAGTGAACTCCTGAAAGAGGGAAGAATTTTGAGTGTGAAGGTGAAGAAGCATTTGAAAAGTGGGAAAAATGTTTCTATGGGGTTTGGATTTGTTGAGTTTGACTCCCCTGAAACTGCTACAAATGTTTGCAGAGATTTGCAGGGGACAGTTTTGGACAGCCATGCTCTTATTTTACAACCTTGTCATGTCAAGAATGATGGGCAAAAACCAAGGACAACTGAGAAGGATAAGAGTTCAACAAAATTGCTCGTAAAAAATGTTGCTTTTGAGGCAACAGAGAAGGATCTTAGACGATTGTTTCGCCCATTTGGCCAGATTAAAAGCCTAAGGTTGCCAATGAAGTTTGGAAGCCATAGAGGCTTTGCTTTTGTAGAGTATGTTACTCAGCAGGAGGCACAATATGCCCTCAAAGCACTTTCAAGCACCCACCTCTACGGGAGGCATCTGGTGATAGAGAGAGCGAAAGAAGGTGAGAGTTTGGAAGAACTGCGAGCTCGAACAGCTGCTCAATTTAGTGACGATCACAATGGATCTCGAGGTGCTATTAATTTATCCAAGAAAAGAAAGGACGTTGACATCATAGAGGAAGGCAAGATGAAGTTTGGAAGGTTTGCTGACTAG 2565 0.4164 MCNRVMSRICVKNLPKHVAEDELREFFSEKGIITDVKLMRTKDGKSRQFAFIGYRTEKEAQEAIRYFNNSFLRTSKITCEVARKLGDENLPRPWSRHSKKKDEKAAAPDVGKPAKVKGPGENLKGSVDVDDPQLQDFLEVMQPRVKSKMWANDTSVVTSVGNNQAVSNKDNEVASVSTDESGSLEDGFPDISEPSSKSREPEPDEVISDMDYFKSRVTKEWSDSESSDKDDEDGNDNDDNDDNSGVSQNEEICDPRNGAREVDLEGKEATSGDVTHGKSQVNVTLEGGQLLKTEDEKGAFESCRLFVRNLPYTTTEEELEEHFSHIGSVSQVHLVVDKDTKRSKGIAYILYTAPEFATRALKELDNSIFQGRLLHILPALQRHSENQENNILKDQSSKTLKKQREEKRKANEASGDTRAWNSLFMRPDTIVENIARKYGVNKSDLLDREADDLAVRIALGETQVISETKKAFKNAGVNVEALEELANNKVDGLKRSNHVLLVKNLPYGSTENELAKMFGKFGSLDKIILPPTKTLALVVFLEPAEARAAFRGLAYKRYKDAPLYLEWAPSNILSQSSTSKNNDMTGAIGENDAKRQILEQHVERLTDVDIDPDRVESFGNKRRKDNARSLFVKNLNFKTTDESLRKHFSELLKEGRILSVKVKKHLKSGKNVSMGFGFVEFDSPETATNVCRDLQGTVLDSHALILQPCHVKNDGQKPRTTEKDKSSTKLLVKNVAFEATEKDLRRLFRPFGQIKSLRLPMKFGSHRGFAFVEYVTQQEAQYALKALSSTHLYGRHLVIERAKEGESLEELRARTAAQFSDDHNGSRGAINLSKKRKDVDIIEEGKMKFGRFAD 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01391 854 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 628 711 IPR000504 GO:0003723
Spst8g01391 854 MobiDBLite consensus disorder prediction 395 414 - -
Spst8g01391 854 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 304 404 - -
Spst8g01391 854 FunFam Multiple RNA-binding domain-containing protein 1 722 828 - -
Spst8g01391 854 SUPERFAMILY RNA-binding domain, RBD 495 587 IPR035979 GO:0003676
Spst8g01391 854 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 728 804 IPR000504 GO:0003723
Spst8g01391 854 SMART rrm2_1 304 377 IPR003954 GO:0003676
Spst8g01391 854 SMART rrm2_1 8 80 IPR003954 GO:0003676
Spst8g01391 854 FunFam Multiple RNA-binding domain-containing protein 1 489 591 - -
Spst8g01391 854 MobiDBLite consensus disorder prediction 254 272 - -
Spst8g01391 854 FunFam - 273 420 - -
Spst8g01391 854 CDD RRM6_RBM19_RRM5_MRD1 728 802 - -
Spst8g01391 854 Gene3D - 3 118 IPR012677 -
Spst8g01391 854 Gene3D - 611 720 IPR012677 -
Spst8g01391 854 CDD RRM4_RBM19_RRM3_MRD1 498 569 - -
Spst8g01391 854 CDD RRM1_MRD1 7 82 - -
Spst8g01391 854 CDD RRM5_RBM19_like 629 707 IPR034423 -
Spst8g01391 854 SUPERFAMILY RNA-binding domain, RBD 301 384 IPR035979 GO:0003676
Spst8g01391 854 MobiDBLite consensus disorder prediction 226 245 - -
Spst8g01391 854 MobiDBLite consensus disorder prediction 161 275 - -
Spst8g01391 854 MobiDBLite consensus disorder prediction 192 225 - -
Spst8g01391 854 SUPERFAMILY RNA-binding domain, RBD 622 716 IPR035979 GO:0003676
Spst8g01391 854 Gene3D - 190 391 IPR012677 -
Spst8g01391 854 MobiDBLite consensus disorder prediction 88 130 - -
Spst8g01391 854 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 381 IPR000504 GO:0003723
Spst8g01391 854 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Spst8g01391 854 MobiDBLite consensus disorder prediction 161 182 - -
Spst8g01391 854 Gene3D - 481 593 IPR012677 -
Spst8g01391 854 Gene3D - 721 827 IPR012677 -
Spst8g01391 854 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 498 570 IPR000504 GO:0003723
Spst8g01391 854 SUPERFAMILY RNA-binding domain, RBD 7 87 IPR035979 GO:0003676
Spst8g01391 854 FunFam RNA-binding motif protein 19 6 105 - -
Spst8g01391 854 FunFam Nucleotide/nucleic acid binding protein 624 719 - -
Spst8g01391 854 Coils Coil 393 413 - -
Spst8g01391 854 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 500 561 IPR000504 GO:0003723
Spst8g01391 854 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 375 IPR000504 GO:0003723
Spst8g01391 854 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 730 797 IPR000504 GO:0003723
Spst8g01391 854 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 630 704 IPR000504 GO:0003723
Spst8g01391 854 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 77 IPR000504 GO:0003723
Spst8g01391 854 MobiDBLite consensus disorder prediction 88 110 - -
Spst8g01391 854 MobiDBLite consensus disorder prediction 387 414 - -
Spst8g01391 854 SMART rrm1_1 8 80 IPR000504 GO:0003723
Spst8g01391 854 SMART rrm1_1 729 800 IPR000504 GO:0003723
Spst8g01391 854 SMART rrm1_1 629 707 IPR000504 GO:0003723
Spst8g01391 854 SMART rrm1_1 499 566 IPR000504 GO:0003723
Spst8g01391 854 SMART rrm1_1 304 377 IPR000504 GO:0003723
Spst8g01391 854 SUPERFAMILY RNA-binding domain, RBD 722 825 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01391 Spst-Chr8 12979001 12991292 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01391 623 844 Eukaryotic Initiation Factors Gene Family AT1G49760 28.444 7.87e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01391 K14787 - gmx:100798742 1356.66