Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01389 ATGAGAAACCCTTCATCAACATCAACAAGCAAGAACAAGAAGAGTGGTGCTAGTAGTACTATTGCCACCATCACCAGCAACAACAGCAACATTGGTAACAGCAGCAATGATAACAGTACCAACACCAACTCCAACAACAACACTCCATGCTGCAGCAAGGTTGGATTGAAGAGAGGACCATGGACACCTGAAGAAGATGAGGTCTTAGCCAATTACATCAAGAAAGAAGGAGAAGGGCGTTGGAGAACTCTCCCCAAGCGTGCTGGCCTTCTCCGGTGCGGTAAAAGCTGCCGTCTCCGCTGGATGAACTACCTTCGCCCCTCCGTCAAACGCGGCCACATCGCCCCTGACGAGGAAGATCTCATCCTCCGCCTCCACCGCCTCCTTGGCAATCGGTGGTCTTTGATTGCTGGGAGGATTCCTGGACGAACAGATAATGAAATAAAGAACTACTGGAATACCCATCTAAGTAAAAAGCTCATTAGTCAAGGGATTGATCCCAGAACTCACAAGCCTCTCAACCCACCATCCATTAATATTCCTTCTTCTACTACTACTACTTTCACTATTCATCCACCTTCTATACCTCCTCCTCCTCCAATGATTATAGCCAGCCACAACCCTTGTCACGATCTTGCTATTGTTAATCAAGGAGTTCATGCGATTCATCATTTGGGTCACCAACCTCCGGTTTCAAATCCCTATGATAACAACATTAACAATCATGTAGCTGCTGTGACAGATGATGTTTCTGCAATGGGGTTCATGGACAATGAGGATTGCAACGATGATATCAACATCAATTATTACTCAGACGATGTCTTTTCCTTCCTCAACTCCTTGATCAACGATGATGCTTTTACCGCGCAGCAACAGCAGCACGTGCAAACAGAGCTCCCCAGTGAGCGTTGCATTTCACTGCCATGTGATGATCGTGTGGATGATCCTCTGGTTTCAATCACCACTGCTTCTGCGTCGCAGGATTATGATGATGACCTTGGTGTTCTGTGGGAATCGCCTCTCGTACCTGCTGCTACTTTCAGCCAACACGATAAAACCACATCTCTTCTAACAAATATAGTTGGAATGCCATGCAGTGACAAAACCAGCGTTGAAGGGGAAATATACAGTTCAATAAAGTCTAGGCGAAATTTTTGGGGCGGGGAGCTTGCTGCTCAAAAATGA 1185 0.4633 MRNPSSTSTSKNKKSGASSTIATITSNNSNIGNSSNDNSTNTNSNNNTPCCSKVGLKRGPWTPEEDEVLANYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNPPSINIPSSTTTTFTIHPPSIPPPPPMIIASHNPCHDLAIVNQGVHAIHHLGHQPPVSNPYDNNINNHVAAVTDDVSAMGFMDNEDCNDDININYYSDDVFSFLNSLINDDAFTAQQQQHVQTELPSERCISLPCDDRVDDPLVSITTASASQDYDDDLGVLWESPLVPAATFSQHDKTTSLLTNIVGMPCSDKTSVEGEIYSSIKSRRNFWGGELAAQK 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01389 394 Gene3D - 115 176 - -
Spst8g01389 394 ProSiteProfiles Myb-like domain profile. 53 105 IPR001005 -
Spst8g01389 394 MobiDBLite consensus disorder prediction 1 47 - -
Spst8g01389 394 FunFam transcription repressor MYB5-like 115 181 - -
Spst8g01389 394 ProSiteProfiles Myb-like domain profile. 106 156 IPR001005 -
Spst8g01389 394 CDD SANT 60 105 IPR001005 -
Spst8g01389 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 53 105 IPR017930 -
Spst8g01389 394 Pfam Myb-like DNA-binding domain 58 105 IPR001005 -
Spst8g01389 394 Pfam Myb-like DNA-binding domain 116 156 IPR001005 -
Spst8g01389 394 SMART sant 57 107 IPR001005 -
Spst8g01389 394 SMART sant 110 158 IPR001005 -
Spst8g01389 394 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 48 176 - -
Spst8g01389 394 FunFam Myb transcription factor 55 111 - -
Spst8g01389 394 Gene3D - 55 111 - -
Spst8g01389 394 SUPERFAMILY Homeodomain-like 55 152 IPR009057 -
Spst8g01389 394 CDD SANT 116 156 IPR001005 -
Spst8g01389 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 160 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01389 Spst-Chr8 12970887 12977666 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01389 44 284 MYB Transcription Factor Family AT3G13540 57.261 2.55e-84 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst8g01389 Myb_DNA-binding 3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01389 K09422 - gmx:100797847 443.351