Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01384 ATGTCGACGCAGAATCGTCGCTCGTCATTTTCCTCTTCAACGGCGTCGTCTTTGGCGAAACGACAATCGTCCGTCGTGCCGTCGGGGAAGCCTGCGACGAGAGCGCCGCTCGCCAATGTTACCAACCAGAGGAACGCGTCTTCCTCTTCTCTGGTGTCAAGTTCAAGTAAAGCTGCCAAGACCAAGAAAGAGGCCCCCGCAAGAAGCAGGAGCATCACAAGATCAACAATTTCTGGGAACAAATTACCTGAGTTAAAGACTACTAACTCAAGCACAACTGTTATTCCTAGGGCTAATTCTTTGTCACAAAGGAAGGATGCTGCTCCCACAGTTGCCAAAGTCTCTGTGCCAGTTCAGAGTAGCATTGACGTGTCTCCTAGTAAATCAGATGCGAGGTCCGTTTCTATGGATGAGACATTGTCTTCTTGTTATTCTATCAAGAGTCCTGATGAAGTTGAATATCTGGACAACAGGGATGTCGCAGCTGTTGATTCAATTCAGAGAAAGACTAGCAATTTGATCATTTCTGACACCACAAAGGCAGAAGGTAAGATATCTACTGGGGAAATAATTGTTGAGCAGGATAGAGGGGACAAGGTTGTCAATATTGATAACATTTACTCTGATCCGCAGCTTTGTGCAACCTATGCTTATGATATCTACAAGCACCTACGTGAATCTGAGGAAAAGAAAAGGCCTTCCACTGACTTCATGGAGAGAATTCAGAACGACATAAATGTTAGCATGCGCGCAATATTGATTGACTGGCTTGTTGAGGTGTCTGAGGAGTATCGCCTTGTACCTGAAACATTGTATTTGACAGTGAACTACATTGATCGGTATCTTTCAGGGAATGTTATGAATAGACAAAGATTACAATTACTCGGTGTTTCCTGCATGATGATTGCCTCTAAATATGAGGAGATTTGTGCACCACAGGTGGAGGAATTTTGCTATATAACTGATAATACGTACTTAAAAGAAGAGCTCTTACGAATGGAATCTGCTATTTTGAAATATCTTAAGTTCGAAATGACAGCCCCAACAATTAAATGTTTCTTAAGACGATTTGTTCGAGCAGCTGCTTATGATGTCCAGGAGCTACCTTCACTTCAGCTGGAGTGCCTAACCAACTATATTGCGGAATTGTCTCTCTTGGAGTACAGCATGTTGTGTTATCCTCCATCACTGATAGCTGCTTCAGCAGTTTTCCTTGCCATATTCATACTTTTCCCTTCAAAGAAACCATGGAATTCCATATTGCAGCATTACGCACTCTACCGGGCTTCTGATTTGTGTGCTTGTGTGAAAGATCTTCATCGCCTTTGTTGCAGCAGCAGCAGCGATACTTCTAATTTACCTGCTATCCGAGAGAAATACAGTCAGCATAAGGTAATTTACCTTAGCAAAAACATAATTTCTATGACTTGTTTACCCTTTTAA 1443 0.4262 MSTQNRRSSFSSSTASSLAKRQSSVVPSGKPATRAPLANVTNQRNASSSSLVSSSSKAAKTKKEAPARSRSITRSTISGNKLPELKTTNSSTTVIPRANSLSQRKDAAPTVAKVSVPVQSSIDVSPSKSDARSVSMDETLSSCYSIKSPDEVEYLDNRDVAAVDSIQRKTSNLIISDTTKAEGKISTGEIIVEQDRGDKVVNIDNIYSDPQLCATYAYDIYKHLRESEEKKRPSTDFMERIQNDINVSMRAILIDWLVEVSEEYRLVPETLYLTVNYIDRYLSGNVMNRQRLQLLGVSCMMIASKYEEICAPQVEEFCYITDNTYLKEELLRMESAILKYLKFEMTAPTIKCFLRRFVRAAAYDVQELPSLQLECLTNYIAELSLLEYSMLCYPPSLIAASAVFLAIFILFPSKKPWNSILQHYALYRASDLCACVKDLHRLCCSSSSDTSNLPAIREKYSQHKVIYLSKNIISMTCLPF 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01384 480 FunFam Cyclin A1 335 470 - -
Spst8g01384 480 SUPERFAMILY Cyclin-like 348 470 IPR036915 -
Spst8g01384 480 FunFam Mitotic cyclin 6 233 333 - -
Spst8g01384 480 CDD CYCLIN_AtCycA-like_rpt2 348 464 - -
Spst8g01384 480 PANTHER CYCLINS 139 462 IPR039361 -
Spst8g01384 480 PIRSF Cyclin_A_B_D_E 1 476 IPR046965 GO:0016538|GO:0044772
Spst8g01384 480 Pfam Cyclin, C-terminal domain 348 465 IPR004367 -
Spst8g01384 480 MobiDBLite consensus disorder prediction 70 106 - -
Spst8g01384 480 Gene3D - 219 468 - -
Spst8g01384 480 Gene3D - 233 346 - -
Spst8g01384 480 Pfam Cyclin, N-terminal domain 219 345 IPR006671 -
Spst8g01384 480 MobiDBLite consensus disorder prediction 1 112 - -
Spst8g01384 480 SMART cyclin_7 255 339 IPR013763 -
Spst8g01384 480 SMART cyclin_7 352 441 IPR013763 -
Spst8g01384 480 SUPERFAMILY Cyclin-like 208 345 IPR036915 -
Spst8g01384 480 MobiDBLite consensus disorder prediction 1 60 - -
Spst8g01384 480 ProSitePatterns Cyclins signature. 250 281 IPR006671 -
Spst8g01384 480 SMART Cyclin_C_2 348 478 IPR004367 -
Spst8g01384 480 CDD CYCLIN_AtCycA_like_rpt1 209 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01384 Spst-Chr8 12931844 12935231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01384 4 470 Core Cell Cycle Gene Families AT1G44110 58.333 7.69e-172 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01384 K06627 - gmx:100776207 677.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01384 8 12931844 12935231 Spst8g01384 8 12931844 12935231 ECH
Spst8g01384 8 12931844 12935231 Spst9g01331 9 12932576 12935721 PCT