Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01373 ATGCTTTCATTCATCTCCTCAAATACCTCTATCATATTCTTCTCTTCCCAAATCCCAACTCATCAATTCTTTACGCTAATCATCCCTTCTTCACCTTCCATGGATCAACGTGATCAAGAAGGCAAACAACCATCCCAGAAAACCCCATCACAGAATCACCTTGACCCAGTTGATAGTTCTGACATTTTTGCTCCACAAAATGGCTTTCAAGAGCAAAGTGACACATTCACAACGTTTGCATCGTTTGAAAGTGGAACTGAGAGCGAGTCCTCTTTTGATGACCACGACGACAGTTCTGACTTTTTCCTGAGCCAAGAGTTTGAATCCGAACTTCAGTTTCCTGAGAGTGAAGGAAGCAATGATGATGATGACAGTGATAGTGATGAGGAAATGGAAGAGGATGAGATCGATGTGGATGAGTTGACCTACGAGGAGTTGATTGAGTTGGGAGATTTCATAGGACAAGAGAAGAGAGGGTTATCAGCAAATGAAATTTGTTCATGCTTGCATTCTCACACCTTCCATTCTGCTGAAAGCAAAAGTGGAATCGATCTTTGTGTGATTTGCCAGGTTGAATATGAAGAGGGTGAAGCATTGGTGGCAATTCAGTGTGAGCACCCTTATCATTCAGATTGCATAAGCAAGTGGCTTCAAATTAAGAAGGTTTGTCCTATATGTAACACTGAAATTTCTGCTCCAAAGATGGTTAATTAA 714 0.4118 MLSFISSNTSIIFFSSQIPTHQFFTLIIPSSPSMDQRDQEGKQPSQKTPSQNHLDPVDSSDIFAPQNGFQEQSDTFTTFASFESGTESESSFDDHDDSSDFFLSQEFESELQFPESEGSNDDDDSDSDEEMEEDEIDVDELTYEELIELGDFIGQEKRGLSANEICSCLHSHTFHSAESKSGIDLCVICQVEYEEGEALVAIQCEHPYHSDCISKWLQIKKVCPICNTEISAPKMVN 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01373 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 234 IPR013083 -
Spst8g01373 237 MobiDBLite consensus disorder prediction 115 137 - -
Spst8g01373 237 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Spst8g01373 237 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 66 231 IPR033276 GO:0004842|GO:0016567|GO:0046621
Spst8g01373 237 SUPERFAMILY RING/U-box 185 233 - -
Spst8g01373 237 MobiDBLite consensus disorder prediction 110 137 - -
Spst8g01373 237 FunFam E3 ubiquitin ligase BIG BROTHER-related 152 233 - -
Spst8g01373 237 MobiDBLite consensus disorder prediction 31 70 - -
Spst8g01373 237 SMART ring_2 186 226 IPR001841 -
Spst8g01373 237 Pfam RING-H2 zinc finger domain 184 227 IPR024766 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01373 Spst-Chr8 12867461 12868174 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01373 121 230 C3H Transcription Factor Family AT3G63530 45.133 2.47e-28 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01373 K19045 - gmx:100780686 265.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01373 8 12867461 12868174 Spst8g01373 8 12867461 12868174 ECH