Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01372 ATGGCCGCCGCACCTCAGCTTCACTTTCCCCCAGGATTCAGATTCCACCCCACAGACGAAGAACTCATCGTTCATTACCTCTGTCGCAAGTGCATCAACCAACAAATCGCCGTTCCCATCATCGCCGAAATCGACCTCTACAAATACGACCCTTGGGACCTTCCAGGAATGGCGTTGTACGGAGAGAAAGAGTGGTATTTTTTCTCGCCGAGGGACCGGAAGTACCCCAACGGTTCCCGGCCGAACCGGTCCGCCGGAACCGGGTATTGGAAAGCAACCGGAGCGGATAAACCGATTGGTAAACCGAAGCCGGTTGGGATCAAGAAAGCGTTGGTGTTTTACGCTGGAAAAGCGCCCAAGGGAGAGAAAACAAACTGGATCATGCACGAGTATCGACTCGCCGACGTGGATCGTTCCGTTCGCAAAAAAAACAGCTTGAGGCTGGATGACTGGGTGCTCTGTCGCATATACAACAAGAAAGGCGCAATTGAGAAGCAGCCACCGCTCAAAATTGAGTGTTCCGAACTAGAGGACGAGAAACCGGCGATTGCGCCGCCGCTGGCGTCGACAGTGGCAGACTGCGTGTACTTCGAGGCGTCGGACTCAGTGCCACGGCTGCACATGACGGACTCGAGCTCCTCCGAGCAGGTGGTGTCGGCGGAGCTGGCGAGCGAGGTGCAGAGCGAGCCAAAGAGGAGCAACAACGAGTTGGCGTATTTCGTGGATGCCACTCTAGCGTCTCAGCTCGAGAGCGCGAATCAGATGTCGCCGCTGCAGGATATCTTCATGTACCTCTCGAAGCCATTCTGA 810 0.5556 MAAAPQLHFPPGFRFHPTDEELIVHYLCRKCINQQIAVPIIAEIDLYKYDPWDLPGMALYGEKEWYFFSPRDRKYPNGSRPNRSAGTGYWKATGADKPIGKPKPVGIKKALVFYAGKAPKGEKTNWIMHEYRLADVDRSVRKKNSLRLDDWVLCRIYNKKGAIEKQPPLKIECSELEDEKPAIAPPLASTVADCVYFEASDSVPRLHMTDSSSSEQVVSAELASEVQSEPKRSNNELAYFVDATLASQLESANQMSPLQDIFMYLSKPF 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01372 269 PANTHER NAC TRANSCRIPTION FACTOR 56 9 211 - -
Spst8g01372 269 FunFam NAC transcription factor 18 163 - -
Spst8g01372 269 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
Spst8g01372 269 Gene3D NAC domain 18 163 IPR036093 GO:0003677|GO:0006355
Spst8g01372 269 ProSiteProfiles NAC domain profile. 9 159 IPR003441 GO:0003677|GO:0006355
Spst8g01372 269 Pfam No apical meristem (NAM) protein 10 133 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01372 Spst-Chr8 12854159 12855390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01372 7 269 NAC Transcription Factor Family AT1G01720 70.526 9.27e-143 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst8g01372 NAM 3.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01372 - - pvu:PHAVU_001G072200g 473.781