Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01345 ATGGAAGAAGGGGGTGAGTTGGCAGAAGAACCAGGTTCATCCATAAATGAGTTGTTTGAGATGGGTAGGAAGAGCTCGAGGATGATGAATATGCAGTTGCAATCCCGAGAGATGGAAAGATCTGGTTGTCAGCAGTTTAATTTGAAGGATTTGGCTGAATCGCTAAAATCGTTAGGAAACAAGGCAATGCAATCTAAGAAATACAATGATGCAATTGAGTTGTATAATTGTGCCATTGCACTCAATGAAAAGAGTGCTGTTTACTTCTGCAACAGGGCAGCTGCTTACACTCAGATTAACAAATATGCAGAAGCAATCCAAGATTGTCATAAATCTATCTGGATTGATCCAAACTACAGCAAGGCATTTAGTCGTCTGGGTTTAATTTATTATGCACAAGGAAATTACAGAGATGCTATTGATAAAGGGTTTAGAAAAGCCTTGCAGTTGGATCCAAATAATGAGTCTGTCAAAGAAAATATAAGGGTTTGTTCTGTTATAACCTTTCCCTCTGCTTCTCTTGTCGTTTTCTATGTGACTGTAGCTGAGCAAAAATTGTTGGAAGAGCAACACCGTGCATATCACAACCAGAATTCAAGATCATCTCAAGAAATTCCGAACCAATCTGCACAAGGGTCAAGAAGACAGGGGGTGTCACCTCCATTTTCTTCTATGCCTATTAACCCCAGCAATATTGCAAGCATGTTAATGAACATGGCCTCAAATGCTACAAATGGACATCAGGGGTCACATCCTCAGGAATGGGAAACAGAAGAGACAGAACCCACTACTCAAACTGAAATTAGAATTGGGGGAGAGGATCTAACAGGGGCCTTTCAAACTATGATGGAAATGTTATCTGGGGCTGTACCTCCAGGACAACCACAAGATCAAACCACTGGAAGAACAGCACCAAACTAA 921 0.4093 MEEGGELAEEPGSSINELFEMGRKSSRMMNMQLQSREMERSGCQQFNLKDLAESLKSLGNKAMQSKKYNDAIELYNCAIALNEKSAVYFCNRAAAYTQINKYAEAIQDCHKSIWIDPNYSKAFSRLGLIYYAQGNYRDAIDKGFRKALQLDPNNESVKENIRVCSVITFPSASLVVFYVTVAEQKLLEEQHRAYHNQNSRSSQEIPNQSAQGSRRQGVSPPFSSMPINPSNIASMLMNMASNATNGHQGSHPQEWETEETEPTTQTEIRIGGEDLTGAFQTMMEMLSGAVPPGQPQDQTTGRTAPN 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01345 306 MobiDBLite consensus disorder prediction 194 230 - -
Spst8g01345 306 SUPERFAMILY TPR-like 51 164 IPR011990 GO:0005515
Spst8g01345 306 ProSiteProfiles TPR repeat profile. 52 85 IPR019734 GO:0005515
Spst8g01345 306 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 47 167 - -
Spst8g01345 306 Gene3D Tetratricopeptide repeat domain 47 226 IPR011990 GO:0005515
Spst8g01345 306 ProSiteProfiles TPR repeat profile. 120 154 IPR019734 GO:0005515
Spst8g01345 306 MobiDBLite consensus disorder prediction 292 306 - -
Spst8g01345 306 Pfam Tetratricopeptide repeat 121 154 IPR013105 -
Spst8g01345 306 PANTHER LD24721P 26 292 IPR047150 -
Spst8g01345 306 SMART tpr_5 52 85 IPR019734 GO:0005515
Spst8g01345 306 SMART tpr_5 86 119 IPR019734 GO:0005515
Spst8g01345 306 SMART tpr_5 120 154 IPR019734 GO:0005515
Spst8g01345 306 MobiDBLite consensus disorder prediction 242 265 - -
Spst8g01345 306 ProSiteProfiles TPR repeat profile. 86 119 IPR019734 GO:0005515
Spst8g01345 306 Pfam Tetratricopeptide repeat 87 119 IPR001440 GO:0005515
Spst8g01345 306 MobiDBLite consensus disorder prediction 196 230 - -
Spst8g01345 306 MobiDBLite consensus disorder prediction 287 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01345 Spst-Chr8 12627079 12630127 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01345 51 150 U-box Gene Family AT3G07370 31.000 4.02e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01345 K16365 - gmx:100799770 366.696