Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01327 ATGGATGACAAATACGGTAGGTCTTGGCTTGCAAGACCAGTAACCCGTAACGAGAAAGAAATGAACACAACATTAGCTATTGATTTGGATGCAATAAATGATCCTTACAAGTTGCCTACAGAAGTTTTGAACACTGCAGTGAGTGCAAGGAGGTTGTCTGATTCGGTGAATATATGGAGGAGTTACAGTGACACGAGTTTCGAATATAAAGTATATCTTCATTTCTTCGACTTTGAAGAAAGGGTAGATAACAGTGAGAAAAGGATAATGAACATTATTGTTAATGGCTTTGGTGACGGTGTTGATGAGAATAAGAATAATGTCACAAAAACCATCAGCCTTTCGCACCGTGACCCTCTTACCGTCCCACTTACCGTAGAACAGGGGATGGGAATCAATAACATTTTCATTAAAGCCACCTCTCACTCTCACTTACCTCCCATGCTCAATGCTTATGAGATTTATAGAGTGATTCCTCAGTCTGCTTCAGCCACGCACCAAGACGATGTGGATGCTATCCAACGCATCAGAGATATCTATAAGATCTCCAGAATCAAGTGGCAAGGAGACCCCTGCGGACCAAAGGGTTTTACATGGGATGGTCTCACTTGTAATACCAATGATCCTCCCAGAATCATCTCATTAAACTTGAGCTCAAGTAAATTGTCCGGCGACATAGATTCCACATTCTCCAACCTTGCAAATTTAGAGATTTTGGATCTGTCAAACAACGAATTGGTGGGACAGGTTCCAGAATTCTTCGCCAAGTTACCACAATTGAAGATCCTGAATAATCTCACAGGTTCCATTCCTGGTGCTCTCATAGAGAAGTCAAATTTGCAATTGAGTTTGGAAGGAAATGGTGGTATATGTGAGATAGGATCATGCGAAAAGAATAAGAATATTGTTCCAGTAGTTGCAACTATAGCATCAGTTGTTGTCTTTTTAATAATAGTGGGCATAGTTATGGCGATTCGGAGATCACTCAGAAAAAATGAAGGAGGGATATCTTCGACTTCAAATAAAGAGCAATTAAAATTGAAAAATCAAACATTTTCTTACTCACAGATTCATGATATCACCGATGGTTTCAAAACAATGATTGGAAAAGGTGGATTTGGTGAAGTTTATCTTGGTACTTTGCAAAGTGGCGAAAGAGTTGCAGTAAAGACACTTTCTTTATCATCAAATCAAGGTTATAAACAGTTTAAGTCCGAGGCAAAATTTCTAACACTTGTTCATCATAGAAATGTGGTTTCTCTTGTGGGGTATTGTGATGAAGGTGATGCTAAAGCACTTATTTACGAATATCTTTCAAAAGGAAATCTCCAAGAACAATTGTCAGATAAAAACTTGAATGTCTTGGGATGGAAAGAGAGACTTCAAATTGCCTTAGATGCAGCAAGCGGATTGGATTATCTGCATAATGGATGCAAGCCACCTATAATTCATAGAGATTTGAAAGGCTCCAACATCTTACTTGATGAAAACATGCATGCCAAGATTTCAGACTTTGGATTGTCTAGAACTTTTGCAAATGACAATGACACTCATGTCTTAACTAATTACCCCGGTGGCACACCAGGTTACCTTGATCCTGAGTATCACTCCTCGGGGACTCTTAATAAAAGAAGTGATGTTTACAGTTTTGGGGTAATTTTGTTAGAGCTAATTACTGGTCAACCAGCAATAAGAGGAACTCCTGACAAACCTAGTCACATACATTATTGGGTTAAACTCAAACTTGAAGCTGGAGATATCCATGCTATAGTTGATCCAAGATTAAAAGGAAATTACAGTGTCGCTTCAGCTTGGAAATTTTTGGAGATAGGTATGTCTTGTCTTCCAGATGTTGCCATCCAAAGGCCTGACATAAGTCACATAACCTCAGAACTAAAGGATTGTTTGTCTTTGGAAGTATCCCTTCAAAGGAATGTGAGCAACAAATTAGATTCATTCCTCATGGATTATACGCTGATTGATTTCAATGAATCTGATATAGTTCCAAATCCTAGGTAG 2019 0.3868 MDDKYGRSWLARPVTRNEKEMNTTLAIDLDAINDPYKLPTEVLNTAVSARRLSDSVNIWRSYSDTSFEYKVYLHFFDFEERVDNSEKRIMNIIVNGFGDGVDENKNNVTKTISLSHRDPLTVPLTVEQGMGINNIFIKATSHSHLPPMLNAYEIYRVIPQSASATHQDDVDAIQRIRDIYKISRIKWQGDPCGPKGFTWDGLTCNTNDPPRIISLNLSSSKLSGDIDSTFSNLANLEILDLSNNELVGQVPEFFAKLPQLKILNNLTGSIPGALIEKSNLQLSLEGNGGICEIGSCEKNKNIVPVVATIASVVVFLIIVGIVMAIRRSLRKNEGGISSTSNKEQLKLKNQTFSYSQIHDITDGFKTMIGKGGFGEVYLGTLQSGERVAVKTLSLSSNQGYKQFKSEAKFLTLVHHRNVVSLVGYCDEGDAKALIYEYLSKGNLQEQLSDKNLNVLGWKERLQIALDAASGLDYLHNGCKPPIIHRDLKGSNILLDENMHAKISDFGLSRTFANDNDTHVLTNYPGGTPGYLDPEYHSSGTLNKRSDVYSFGVILLELITGQPAIRGTPDKPSHIHYWVKLKLEAGDIHAIVDPRLKGNYSVASAWKFLEIGMSCLPDVAIQRPDISHITSELKDCLSLEVSLQRNVSNKLDSFLMDYTLIDFNESDIVPNPR 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01327 672 Pfam Protein tyrosine and serine/threonine kinase 365 567 IPR001245 GO:0004672|GO:0006468
Spst8g01327 672 CDD STKc_IRAK 368 633 - -
Spst8g01327 672 Pfam Leucine rich repeat 214 264 IPR001611 GO:0005515
Spst8g01327 672 ProSitePatterns Protein kinases ATP-binding region signature. 368 390 IPR017441 GO:0005524
Spst8g01327 672 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 438 646 - -
Spst8g01327 672 Gene3D Ribonuclease Inhibitor 174 293 IPR032675 -
Spst8g01327 672 PANTHER OS07G0107800 PROTEIN-RELATED 2 636 - -
Spst8g01327 672 FunFam serine/threonine-protein kinase PBS1-like 331 437 - -
Spst8g01327 672 SMART serkin_6 362 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g01327 672 Pfam Malectin-like domain 1 157 IPR024788 -
Spst8g01327 672 Gene3D Transferase(Phosphotransferase) domain 1 438 655 - -
Spst8g01327 672 FunFam Leucine-rich repeat receptor-like kinase 168 293 - -
Spst8g01327 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 482 494 IPR008271 GO:0004672|GO:0006468
Spst8g01327 672 ProSiteProfiles Protein kinase domain profile. 362 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g01327 672 SUPERFAMILY Protein kinase-like (PK-like) 343 631 IPR011009 -
Spst8g01327 672 Gene3D Phosphorylase Kinase; domain 1 344 437 - -
Spst8g01327 672 SUPERFAMILY L domain-like 196 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01327 Spst-Chr8 12401707 12405415 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01327 2 652 Receptor kinase-like Gene Family AT1G51850 41.997 1.10e-168 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Spst8g01327 PK_Tyr_Ser-Thr 3.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01327 - - vra:106763618 841.262