Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01323 ATGGTTAAGCCAGAGAACAAGATCCACGCAGAATCGTCAAAGCCACTGAATGCACTATCTTCCTCATCGCCAGCATCAAGTGACAACAAGAAGAAGTACAAGGGAGTGAGGATGAGAAGCTGGGGCTCATGGGTGTCAGAGATTAGAGCACCAAACCAAAAAACTAGAATATGGTTGGGATCCTATTCAACTGCTGAGGCAGCAGCAAGAGCCTATGATGCTGCACTACTATGCCTTAAGGGTTCCTCAGCCAATCTCAACTTCCCTTCAAGCTCTTCACACTACATTCCTCAAGACACTGCCATGTCCCCAAAATCAATCCAAAGAGTTGCTGCAGCTGCTGCCAACAACTTTTTGGACAATGCTTTTGCTACCATCCCTTCTTCTCCATCATCTCCACCTTCTCCTCCTCTTGCTTCAACCTCTTCCTCTTCACTGGCCTCATCATCATCAATGTCATCATCTCCCTTAGACCAAATTGATGATGATGTCTCACTTCTGTCACCATTTGGGACCTACACTCCTCCTCCTCCAATTAACTCTGATCAAGCAAATGAATCAATGAGTATGATGGAATATTGGTATGGTTTGGAGGGGTTGCAATCCCCAAAGTATGTTGAGCAAATGCTAAGTGGGGCTTTCTTTGACATTGATTCAACACAGTTGTTCGATGATCCGTATGAAGAAAGTGACATCCGTTTGTGGAGTTTCTGCTGA 717 0.4505 MVKPENKIHAESSKPLNALSSSSPASSDNKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANLNFPSSSSHYIPQDTAMSPKSIQRVAAAAANNFLDNAFATIPSSPSSPPSPPLASTSSSSLASSSSMSSSPLDQIDDDVSLLSPFGTYTPPPPINSDQANESMSMMEYWYGLEGLQSPKYVEQMLSGAFFDIDSTQLFDDPYEESDIRLWSFC 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01323 238 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Spst8g01323 238 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Spst8g01323 238 Pfam AP2 domain 32 81 IPR001471 GO:0003700|GO:0006355
Spst8g01323 238 MobiDBLite consensus disorder prediction 13 29 - -
Spst8g01323 238 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 17 171 - -
Spst8g01323 238 Gene3D AP2/ERF domain 31 90 IPR036955 GO:0003700|GO:0006355
Spst8g01323 238 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Spst8g01323 238 CDD AP2 31 91 IPR001471 GO:0003700|GO:0006355
Spst8g01323 238 MobiDBLite consensus disorder prediction 138 158 - -
Spst8g01323 238 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Spst8g01323 238 MobiDBLite consensus disorder prediction 127 158 - -
Spst8g01323 238 SUPERFAMILY DNA-binding domain 32 90 IPR016177 GO:0003677
Spst8g01323 238 FunFam ethylene-responsive transcription factor ERF014-like 31 91 - -
Spst8g01323 238 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01323 Spst-Chr8 12358767 12359483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01323 33 237 AP2-EREBP Transcription Factor Family AT1G21910 48.585 1.95e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst8g01323 AP2 5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01323 - - gmx:100813313 295.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01323 8 12358767 12359483 Spst8g01323 8 12358767 12359483 ECH