Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01321 ATGCCACTGAACCGTGGCCAAGGCCAAACCACAAGGTGGTATCAGCTATGTTTTGTTCCCACTAGTCCAGACAGTTCAGATGACTCAGACATAGAATCTGTAGTCCTTACTCCTAGTACAATAACTAGTAGCACATGGCAAGAACTTTCTCCAACGCCAACACTACCACCACCACCACCACCTCCTCCACCAAATCCTGAACCTCAGATTGATTGGCGTCTTCCACCACCACCACCACCACCAGATTTTGTACCGTCATTGATGCTGCATCAATGGCAGCATCAGCCTGAATGGACCGGGGCTTGGGAATATTTTAACATAGAAGTACAGCAACATAGCCATCAGGCTCCCAGTCTTAGTCGTGCGTTTGAAGGTGATAAAAGTGGGTGCTCAATGAATGCCAGGAATGGCCTTGGAATGGTAAGACTATCAGACATAGATAAACTCTCTAACTGTCCCATTTGTATGGATGAGTTTAAAGTGTGTGATCAAGCATACCGGTTACCCTGCAACCACACCTATTGTTCTGAATGCATTCTTCGTTGGCTTAACAACAGCAAAACTTGTCCAGTTTGCAGGCTTCAATTGAATGGTTATAGTTTTGATAGCATAAATGATAATAATGGTTTGGATTCACAACTTGATCTTCTGTCGCTGTCACCACCAGCAGTAGTTCATAATGATTTGCCCCGTAACTGGGAGCACTTCTTTCAATCCCCTCCCTCCCTTATGCCAGGTATAGAGAATAGCATAAATGATAATGATAGTTTGGACTCTGAACCTGATAATGATGGTTTGGACTCTGAACCTGAAACTTTTTTGTCGCCACATCCGTCACCACCACTATCAGTAATACACAATGATTCGCCCCTGCACACGGAGTACTTTTACGAATCCCGTCCGTACCTCACACCAGGTATAGAGAATAGTGCAAGTGGTAACTCAGATGTAGTGCATTTGGATGAGCTTGGCAATTCTCATGAAGATGGTGCTTCTCATAATGCTTCTGATACAATAATTTAA 1023 0.4399 MPLNRGQGQTTRWYQLCFVPTSPDSSDDSDIESVVLTPSTITSSTWQELSPTPTLPPPPPPPPPNPEPQIDWRLPPPPPPPDFVPSLMLHQWQHQPEWTGAWEYFNIEVQQHSHQAPSLSRAFEGDKSGCSMNARNGLGMVRLSDIDKLSNCPICMDEFKVCDQAYRLPCNHTYCSECILRWLNNSKTCPVCRLQLNGYSFDSINDNNGLDSQLDLLSLSPPAVVHNDLPRNWEHFFQSPPSLMPGIENSINDNDSLDSEPDNDGLDSEPETFLSPHPSPPLSVIHNDSPLHTEYFYESRPYLTPGIENSASGNSDVVHLDELGNSHEDGASHNASDTII 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01321 340 MobiDBLite consensus disorder prediction 313 340 - -
Spst8g01321 340 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 136 196 - -
Spst8g01321 340 MobiDBLite consensus disorder prediction 244 282 - -
Spst8g01321 340 Pfam Ring finger domain 151 193 IPR001841 -
Spst8g01321 340 SUPERFAMILY RING/U-box 151 196 - -
Spst8g01321 340 SUPERFAMILY Formin homology 2 domain (FH2 domain) 59 123 - -
Spst8g01321 340 ProSitePatterns Zinc finger RING-type signature. 170 179 IPR017907 -
Spst8g01321 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 223 IPR013083 -
Spst8g01321 340 MobiDBLite consensus disorder prediction 19 50 - -
Spst8g01321 340 MobiDBLite consensus disorder prediction 19 79 - -
Spst8g01321 340 ProSiteProfiles Zinc finger RING-type profile. 152 193 IPR001841 -
Spst8g01321 340 SMART ring_2 152 192 IPR001841 -
Spst8g01321 340 MobiDBLite consensus disorder prediction 51 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01321 Spst-Chr8 12347128 12348150 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01321 152 219 C3H Transcription Factor Family AT2G44330 44.118 8.86e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01321 - K11982 gmx:102665811 283.108