Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01320 ATGGAAGCAATCATGGACGACCCTGATTTCCTCGACTTCTCCGATCACAGCATCATCACCACTCCTTCCTCCGACGAAGACTGGACCAACCTCTGGTCCCCCCTCGTCGATTGGGAATCCTTCGCCGCCGGCCCAGACGATTTTCAAACCCTCATTGACTCCATCATCCATGAAGACGACGACGTCGTTTTGACCCCAGATCAAGTTAGCGCCCAAGAGTCCGACTTAAGCGCCAACGACGAGAAGGGCCTCCGCCTGGTGCACCTCCTCATGGCGGCGGCGGAGGCCCTCACCACCGGCACCGAGAGCCACCACCTGGCTCGAGCGATATTGGTTCGGCTCAACGAGTTGGTGTCCCCCACCCACGGCACCAACATCGAAAGACTCGCGGCACATTTTAGTAGCGCCCTCCAAAACCTGCTAGACAGCGCCGCGACTGCGCATACCATAACCACCGACACCCCCAACCTCACGGACACGCTCACCGCGTTCCACCTTCTCCAGGACATGTCCCCTTACGTCAAGTTCGCGCACTTCACCGCCAACCAGGCCATCTTAGAGGCCGTGGCCCACGAAAAGCGGGTCCACATCGTCGACTTCGACGTCACCGAAGGGGCCCAATGGGCCTCCCTAATCCAGTCCCTCTCTTCAAGAAGCACCGGCCCACCAGGCCCTCACCTCCGCATCACCGCATTGTCCAGAGGCGCCTCTGGACGGAGATCCATCCCCACCGTTCAGGAAACCGGACGGAGGCTAACCGCTTTCGCCGCTTCCGTGGGGCAACCGTTTTCGTTTCACCAGTGTCGGTTGGACCCTGACGAAACGTTTCGACCTTCGTCTCTGAAACTGGTTCGTGGCGAGGCCTTGGTGTTTAACTGCATGCTGCATTTGCCGCACCTGAGCTTCCGTGCCTCAGGTTCGGTTGCTTCATTTTTGAAAGGAGCGAAGGAGTTGAACCCGAGGGTGGTGATGGTGGTAGAGGAAGAGGTGGCGCGCAGTGGAGATGCGGGCTTTGTGGGCCTTTTTATGGATTCGCTGCACCACTACTCGGCGGTGTTTGATTCGCTTGAGGTTGGGTTTCCCATGCATAGATGGGCCCGGGCCTTGGTAGAGCGCGTGTTGTTGGGCCCAAGAATAGGAAGTTGCGTGGAGCGAATGTACCGGAGTGGAGGAGAGGAGAGAGGGTCGTGGGAGGAGTGGTTGGGTGCGGCGGGATTCAGGGGAGTTCCCGTAAGCTTCGCTAATCATTGCCAAGCGAATCTGTTACTAGGATTGTTTAACGATGGGTATAGAGTGGAGGAGTTGGGGAACAATAAATTGGTGTTGGGTTGGAAATCACGCCGTTTGCTTTCAGCCTCTGTTTGGACTTCAAACTCTTGA 1380 0.5739 MEAIMDDPDFLDFSDHSIITTPSSDEDWTNLWSPLVDWESFAAGPDDFQTLIDSIIHEDDDVVLTPDQVSAQESDLSANDEKGLRLVHLLMAAAEALTTGTESHHLARAILVRLNELVSPTHGTNIERLAAHFSSALQNLLDSAATAHTITTDTPNLTDTLTAFHLLQDMSPYVKFAHFTANQAILEAVAHEKRVHIVDFDVTEGAQWASLIQSLSSRSTGPPGPHLRITALSRGASGRRSIPTVQETGRRLTAFAASVGQPFSFHQCRLDPDETFRPSSLKLVRGEALVFNCMLHLPHLSFRASGSVASFLKGAKELNPRVVMVVEEEVARSGDAGFVGLFMDSLHHYSAVFDSLEVGFPMHRWARALVERVLLGPRIGSCVERMYRSGGEERGSWEEWLGAAGFRGVPVSFANHCQANLLLGLFNDGYRVEELGNNKLVLGWKSRRLLSASVWTSNS 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01320 459 ProSiteProfiles GRAS family profile. 77 456 IPR005202 -
Spst8g01320 459 Pfam GRAS domain family 86 456 IPR005202 -
Spst8g01320 459 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 76 452 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01320 Spst-Chr8 12338979 12340358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01320 52 458 GRAS Transcription Factor Family AT5G41920 33.813 9.68e-57 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Spst8g01320 GRAS 6.7e-103 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01320 - - pvu:PHAVU_008G165200g 791.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01320 8 12338979 12340358 Spst8g01320 8 12338979 12340358 ECH