Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01285 ATGCCTCCGCCGGAGCCTCGCCGAGTCGACCCCAAAATCTGGCGGGCATGCGCCGGCGCCGCCGTGCACATCCCGAAGCTGCATTCTAGGGTTTACTACTTCCCTCAGGGTCACATGGAGCACGCCTCTCCCTCACATTTGCTCTCCCCTGCCTTCCGTTCCCTCCCCTTCGTTCCCTGCATCGTGTCCTCCCGCGAATTGCTCGCCGATCCTTTCTCTGACGAGGTCTTCGCCAAGCTCATCCTCACTCCCCTCCCTCATCCCTTCCATCACAACCACCAAAACTACGGCAGCAACACCGGAAACGATGACGACGAGCGCGAGTGCCAAAACGCCGTCGTTTCGTTCTCCAAAATTCTCACGCCCTCCGACGCCAACAACGGCGGCGGATTCTCCGTGCCTCGCTTCTGCGCTGACTCCGTCTTCCCTCCGCTTGATTTCCGTGCAGATCCTCCCGTCCAGCTCCTTACCGTCACCGACGTTCACGGCGTCGCGTGGCGGTTCCGCCACATCTACCGTGGCACTCCGCGCAGGCACCTCTTCACCACCGGCTGGAGCAAGTTCGTCAACCACAAGAAGCTCATCGCCGGCGACTCTGTCGTTTTCGTCAAGGACGCCGATGGGAACGTCTCTGTCGGGATCCGCCGCTCAACGAGGTTCGCCTCCACAACCTCGATTGTCGAGGCGGAGCAGCCGGCGCCGGCGCAGGGGGAGGGGTTTACTCGTAGCGCGACCGGGAGAGTGTCGCCGAAGGCGGTGGCAACCGCGACAGAGTCCGCGGCGCGGAACGCCCCTTTTGAGGTGGTGTATTATCCGAAGGCGGGTTTGGCGGATTTTGTGGTGAGTGCTGAGGTTGTGGAGGACGCGATGAAGTGCGCGTGGGTTGCCGGAATGAGAGTGAAGATAGGAATGGAGACTGAGGATTCTTCTAGAATGACTTGGTTTCAAGGGACGGTGACTTCTGCGAATGCATCTGATAATGGACCTTGGCGCATGCTTCAGGTTAATTGGGATGAACCTGAAGTCTTGCATAATGCTAAGCGAGTCAGTCCTTGGCAGGTTGAACTTGTTTCACCCTCACTTGCACTTCATACAATGTTTTCCCCTTCAAAAAGGTTTAGAGCTGACCAAGGTTCTGGACTGATAAGTGATAGGGAGGGAGACCCCTTCTTTCCTATGACAGGTTTCCCTAACTCAACAATGGGACACATGGATAAGAAATTGTTGAGTTATGATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTGCATCAAGTTTTTCCAACTTTTTAAATGATAACTCTTATCTGTACATGGGTAGCAGTTCCTTCGGGAACAATATGGGAATTGTGTCAACAGAGCTAAACATCAGCAGCTCTCAATCAGATGACCTGTCACCACATAGCCAGAGTAGTTTACATTCCTTTGACACTGAGTTTACTGGGACCCGGCACTGCAACACCAAAGTTGCTTCTGGTTCAATTCTGCTATTTGGTAAGATCATACAGCCTGCTGATAGTCATTTGCATGATGCTGCTGATTGCATGGAACGTGATGGCAGTAGGGGCAGCAAGGAAACTGAAGACAGTTGA 1605 0.5421 MPPPEPRRVDPKIWRACAGAAVHIPKLHSRVYYFPQGHMEHASPSHLLSPAFRSLPFVPCIVSSRELLADPFSDEVFAKLILTPLPHPFHHNHQNYGSNTGNDDDERECQNAVVSFSKILTPSDANNGGGFSVPRFCADSVFPPLDFRADPPVQLLTVTDVHGVAWRFRHIYRGTPRRHLFTTGWSKFVNHKKLIAGDSVVFVKDADGNVSVGIRRSTRFASTTSIVEAEQPAPAQGEGFTRSATGRVSPKAVATATESAARNAPFEVVYYPKAGLADFVVSAEVVEDAMKCAWVAGMRVKIGMETEDSSRMTWFQGTVTSANASDNGPWRMLQVNWDEPEVLHNAKRVSPWQVELVSPSLALHTMFSPSKRFRADQGSGLISDREGDPFFPMTGFPNSTMGHMDKKLLSYDTFPAGMQGARHDLFSASSFSNFLNDNSYLYMGSSSFGNNMGIVSTELNISSSQSDDLSPHSQSSLHSFDTEFTGTRHCNTKVASGSILLFGKIIQPADSHLHDAADCMERDGSRGSKETEDS 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01285 534 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 508 IPR044835 GO:0003677|GO:0006355|GO:0009725
Spst8g01285 534 Pfam Auxin response factor 256 331 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Spst8g01285 534 FunFam Auxin response factor 114 218 - -
Spst8g01285 534 CDD B3_DNA 115 216 IPR003340 GO:0003677
Spst8g01285 534 ProSiteProfiles B3 DNA-binding domain profile. 116 218 IPR003340 GO:0003677
Spst8g01285 534 Pfam B3 DNA binding domain 116 217 IPR003340 GO:0003677
Spst8g01285 534 SUPERFAMILY DNA-binding pseudobarrel domain 110 223 IPR015300 -
Spst8g01285 534 SMART B3_2 116 218 IPR003340 GO:0003677
Spst8g01285 534 Gene3D - 113 217 IPR015300 -
Spst8g01285 534 Gene3D - 294 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01285 Spst-Chr8 11974592 11977520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01285 7 532 B3 DNA Binding Superfamily AT1G77850 48.221 6.59e-166 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Spst8g01285 B3 2.2e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01285 - - gmx:100804933 832.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01285 8 11974592 11977520 Spst8g01285 8 11974592 11977520 ECH
Spst8g01285 8 11974592 11977520 Spst9g01234 9 11639837 11642698 PCT