Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01267 ATGGTTGAAGCCTTGGAAACCGAAGAAAGGCCCAAATTCAGGGATATTAGGCGCTATTTCTGTGAGTACTGCGGTATCTGCAGATCCAAAAAAACCCTAATCGCCTCTCACGTCAATTCGCATCACAAGGATGAGCTTGAAAAAACAAGAGCAGAAAGAGATCCTGAAGCAGCAGAGCCTTCGAAATCCAACACGTGTGAGGAATGTGGTGCCACTTTCAAGAAACACGCATATTTGTTGCAGCATATGCAAAGTCATTCACTTAAGAGGCCGTTTGTGTGTGCAGTTGATGGTTGTCAGGCGAGTTATAGAAGGAAGGACCACCTGACTAGGCACCTTCTACTACATGAAGGGAAGACTTTCAAGTGCCCTGTTGTTAATTGCTGCATTGAGTTCTCTTTGCAAAGCAATATGAAAAGGCATGTTGAGGAGATTCACGATGACAGTTCTACTGCAGCTACTGACAAAAGTCACAAACAACATCTGTGTCCAGAGATTGGATGTGGAAAAGTTTTCAGATTTGCATCACAGCTAAAGAAGCATGAAGATTCTCATGTTAAGCTTGAGTCAGTAGATGTGGTGTGCTTAGAGCCTGGTTGCATGAAACATTTTACTAATGTCCAGTGTCTTAAAGCCCATGTGACGTCCTCCCATCAATATATGACCTGTGACATTTGTGGGTCTAAGCAGCTGAAGAAGAATATTAAGCGTCACCTTCGTTCACATGAAGCTAACAGCAGTTCATCAGAGACCTTTCGATGCGAGTTTAAGGGTTGTAGCAGCTCATTCTCTAGTAAGTCTAATCTTGACAAGCATAAGAAGGTTGTGCACTTTAAAGAAAAGCCTTTTCTGTGTGGGTTTCCTGATTGTGGCATGAGATTTGCTTACAAACATGTGCGGGATAATCACGAAAAAACTGCCAAACATGTTTTTACCCTTGGAGATTTTGAAGAAGCTGATGAAGAGTTCAGGTCAAGGCCGAGGGGAGGGAGGAAGAGAAAATGTCCTACTGTTGAAATGTTAATAAGGAAGAGGGTTACCCCACCTCCTCAATTGGAGGATTGGTTATTTATGCAGGATCGCGAGTAG 1089 0.4307 MVEALETEERPKFRDIRRYFCEYCGICRSKKTLIASHVNSHHKDELEKTRAERDPEAAEPSKSNTCEECGATFKKHAYLLQHMQSHSLKRPFVCAVDGCQASYRRKDHLTRHLLLHEGKTFKCPVVNCCIEFSLQSNMKRHVEEIHDDSSTAATDKSHKQHLCPEIGCGKVFRFASQLKKHEDSHVKLESVDVVCLEPGCMKHFTNVQCLKAHVTSSHQYMTCDICGSKQLKKNIKRHLRSHEANSSSSETFRCEFKGCSSSFSSKSNLDKHKKVVHFKEKPFLCGFPDCGMRFAYKHVRDNHEKTAKHVFTLGDFEEADEEFRSRPRGGRKRKCPTVEMLIRKRVTPPPQLEDWLFMQDRE 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01267 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 161 190 IPR013087 -
Spst8g01267 362 PANTHER ZINC FINGER PROTEIN 5 351 - -
Spst8g01267 362 Pfam Zinc finger, C2H2 type 163 185 IPR013087 -
Spst8g01267 362 Pfam Zinc finger, C2H2 type 65 86 IPR013087 -
Spst8g01267 362 Pfam Zinc finger, C2H2 type 92 116 IPR013087 -
Spst8g01267 362 Pfam Zinc finger, C2H2 type 252 277 IPR013087 -
Spst8g01267 362 Gene3D Classic Zinc Finger 5 92 - -
Spst8g01267 362 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Spst8g01267 362 ProSitePatterns Zinc finger C2H2 type domain signature. 123 146 IPR013087 -
Spst8g01267 362 SUPERFAMILY beta-beta-alpha zinc fingers 79 118 IPR036236 -
Spst8g01267 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 121 IPR013087 -
Spst8g01267 362 SMART c2h2final6 121 146 IPR013087 -
Spst8g01267 362 SMART c2h2final6 221 242 IPR013087 -
Spst8g01267 362 SMART c2h2final6 64 86 IPR013087 -
Spst8g01267 362 SMART c2h2final6 252 277 IPR013087 -
Spst8g01267 362 SMART c2h2final6 92 116 IPR013087 -
Spst8g01267 362 SMART c2h2final6 283 309 IPR013087 -
Spst8g01267 362 SMART c2h2final6 161 185 IPR013087 -
Spst8g01267 362 SMART c2h2final6 193 218 IPR013087 -
Spst8g01267 362 SMART c2h2final6 19 41 IPR013087 -
Spst8g01267 362 ProSitePatterns Zinc finger C2H2 type domain signature. 254 277 IPR013087 -
Spst8g01267 362 MobiDBLite consensus disorder prediction 38 61 - -
Spst8g01267 362 ProSitePatterns Zinc finger C2H2 type domain signature. 94 116 IPR013087 -
Spst8g01267 362 ProSitePatterns Zinc finger C2H2 type domain signature. 285 309 IPR013087 -
Spst8g01267 362 SUPERFAMILY beta-beta-alpha zinc fingers 236 291 IPR036236 -
Spst8g01267 362 Gene3D Classic Zinc Finger 93 157 - -
Spst8g01267 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 252 282 IPR013087 -
Spst8g01267 362 Gene3D Classic Zinc Finger 247 323 - -
Spst8g01267 362 Gene3D Classic Zinc Finger 158 243 - -
Spst8g01267 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 121 151 IPR013087 -
Spst8g01267 362 MobiDBLite consensus disorder prediction 38 63 - -
Spst8g01267 362 ProSitePatterns Zinc finger C2H2 type domain signature. 163 185 IPR013087 -
Spst8g01267 362 ProSitePatterns Zinc finger C2H2 type domain signature. 195 218 IPR013087 -
Spst8g01267 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 91 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01267 Spst-Chr8 11758662 11760669 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01267 88 312 C2H2 Transcription Factor Family AT1G72050 49.819 9.60e-88 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst8g01267 zf-C2H2 0.012 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01267 K09191 - gmx:100801812 662.529