Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01266 ATGGGTCGTGTTAAACTCGAGATAAAGAGAATAGAGAACGCTGCCAATCGCCAAGTTACATTCTCAAAGCGAAGAAATGGCCTCATCAAGAAAGCCTACGAGCTTTCAATTCTTTGTGACATTGATATTGCCGTCATAGTCTTTTCTCCTTCCGGACGTCTCAACCACTTCTCCGGCAGAAGAAGGATTGAGGATGTTTTTACTCGTTACATTAATCTTCCTGACCAAGAAAGAGATAATGCTGTAAGTTTTCCAGAGCTACCGTACCGCAGGGGTATTCAGAACAAGGAGGAACTTCAACAAGAAGTTAATAGGCTACAACAGCAACTTCAAATGGCCGAAGAGCAGATAAGGTTATACGAACCCGATCCGTTAAAGATGTCATCAATGGCGGATCTTGAAAATAGTGAAAAGCATCTTGTAGATGTTTTGTCACGAGTCATACAAAGAAAGGTTGCTAATATATATGCAACATCAGAATACTTAATGAGCAACCATCTATCTTCATATGATCCCTCTGGCATTCAGGATGGGAGTCAAAATCATGCCCAGATTTTTGATGCATCTGCTCCTTTGGATCCTCTCAGGGACTTGTCTTCGACTGTGTATGGTTCATTTTCGCAAGGGACAAGTTCAAACGCCGATCCACGTGGCATAGGAGAGTGCCACGTGTCAAATCCAAGTGATGGGAACCTTCAAGCATGGCCTCAAGGGTACACATTGTATCCACATCATCACATTCAGCATGAGATTGTGGGACCCGACTTGCCAGATATAATGCCACATGGACAGGTGAATATCCCAATCACTGCCACACACGTGGAACCACCCAAGAACGAACATGCAGAATATGACCAGTCTAAACAACAACCTCGTCCTCATCCTTCTCATCAACCGCAACAGCATCAGCATCAGCATCATCAGCTCAATGCCCAATGA 939 0.4398 MGRVKLEIKRIENAANRQVTFSKRRNGLIKKAYELSILCDIDIAVIVFSPSGRLNHFSGRRRIEDVFTRYINLPDQERDNAVSFPELPYRRGIQNKEELQQEVNRLQQQLQMAEEQIRLYEPDPLKMSSMADLENSEKHLVDVLSRVIQRKVANIYATSEYLMSNHLSSYDPSGIQDGSQNHAQIFDASAPLDPLRDLSSTVYGSFSQGTSSNADPRGIGECHVSNPSDGNLQAWPQGYTLYPHHHIQHEIVGPDLPDIMPHGQVNIPITATHVEPPKNEHAEYDQSKQQPRPHPSHQPQQHQHQHHQLNAQ 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01266 312 MobiDBLite consensus disorder prediction 201 229 - -
Spst8g01266 312 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 289 - -
Spst8g01266 312 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Spst8g01266 312 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Spst8g01266 312 MobiDBLite consensus disorder prediction 275 312 - -
Spst8g01266 312 MobiDBLite consensus disorder prediction 201 215 - -
Spst8g01266 312 Gene3D - 14 86 IPR036879 GO:0003677|GO:0046983
Spst8g01266 312 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Spst8g01266 312 FunFam MADS-box transcription factor 41 13 91 - -
Spst8g01266 312 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Spst8g01266 312 MobiDBLite consensus disorder prediction 276 290 - -
Spst8g01266 312 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Spst8g01266 312 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Spst8g01266 312 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Spst8g01266 312 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst8g01266 312 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Spst8g01266 312 MobiDBLite consensus disorder prediction 291 312 - -
Spst8g01266 312 Coils Coil 89 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01266 Spst-Chr8 11748467 11752171 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01266 1 271 Type I MADS-box Gene Family AT1G22130 48.447 1.54e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst8g01266 SRF-TF 6.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01266 - - pvu:PHAVU_008G170400g 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01266 8 11748467 11752171 Spst8g01266 8 11748467 11752171 ECH