Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01251 ATGGCAGCTATGATGGATTTCTACAACGGACAAGGTCAAGTTCAGTCAGATCCATTCAGAGGTGAGCTCATGGAAGTTCTAGAACCTTTTATGAAAAGTCCTTCCTCAACTCCCTCTTTATCTTCGGATTCACCTTTCCCTTCAACTTCAACTTCATATTCCTACTCTCCTTCCCCACTTTCAATCCCTCCACACCCCAATTTCTACACAGACCCTTCCTCCAACCTATTCCAAACCCCAACCCTGATAGGCTTTGAACAACAACCCACTTCTGCTATCGGGCTCAACCACCTAAGCCCGTTTCAGGTTTCTCAGATCCAGGCCCAGATCCAGGCCCAGAGCCAGTCCTCCCTCTCCCTGAACTTCCTGACTCCCAAGCCCGTGCCCATGAAGCAAGTGGGTGGGCCTGCGAAGCCCACGAAGCTGTACCGCGGGGTGAGGCAGAGGCATTGGGGAAAGTGGGTGGCGGAGATCAGACTCCCCAAGAACCGAACCAGGCTCTGGCTCGGAACCTTCGACACCGCCGAGGAAGCCGCTTTGGCGTATGACAAAGCCGCGTACAGACTCCGAGGCGACTTCGCCAGGCTCAACTTCCCGAACCTTAAAGGTTCGTGCCTCAGCGAGTACAAGCCTCTGCAGTCCGCGGTGGACGCTAAGCTCGATGCCATTTGTCAGAGCCTGGCCGAAATGCCGAAGCAGGGGAAGACAGAGAAGGGTGCCAGGTCATGCAGGAAGTCCAAAGCAGTTCCAAAGGAGGCTCAGAATCCGAACCAGGACTCCAAGCCTAACTCGAACCTGAACGTTTCGTGCAAGACCGAACCGGAACCTGAACCAGAACCTGCTCTGTCTCCTGAAAGCGAGGGTTCTGTGGATTCTTCTCCGCTCTCTGATCTTACCTTCGATGTCGCCGAGCCGCAGTGGGAAGATGCTTCTGCACATTTTAACTTGCAGAAGTTTCCTTCTTATGAGATCGATTGGGATTCTCTGTGA 990 0.5354 MAAMMDFYNGQGQVQSDPFRGELMEVLEPFMKSPSSTPSLSSDSPFPSTSTSYSYSPSPLSIPPHPNFYTDPSSNLFQTPTLIGFEQQPTSAIGLNHLSPFQVSQIQAQIQAQSQSSLSLNFLTPKPVPMKQVGGPAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYRLRGDFARLNFPNLKGSCLSEYKPLQSAVDAKLDAICQSLAEMPKQGKTEKGARSCRKSKAVPKEAQNPNQDSKPNSNLNVSCKTEPEPEPEPALSPESEGSVDSSPLSDLTFDVAEPQWEDASAHFNLQKFPSYEIDWDSL 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01251 329 ProSiteProfiles AP2/ERF domain profile. 142 199 IPR001471 GO:0003700|GO:0006355
Spst8g01251 329 Pfam AP2 domain 143 191 IPR001471 GO:0003700|GO:0006355
Spst8g01251 329 MobiDBLite consensus disorder prediction 234 248 - -
Spst8g01251 329 CDD AP2 141 201 IPR001471 GO:0003700|GO:0006355
Spst8g01251 329 FunFam Ethylene-responsive transcription factor 2 141 200 - -
Spst8g01251 329 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 5 329 - -
Spst8g01251 329 MobiDBLite consensus disorder prediction 31 58 - -
Spst8g01251 329 MobiDBLite consensus disorder prediction 251 271 - -
Spst8g01251 329 SUPERFAMILY DNA-binding domain 142 199 IPR016177 GO:0003677
Spst8g01251 329 SMART rav1_2 142 205 IPR001471 GO:0003700|GO:0006355
Spst8g01251 329 MobiDBLite consensus disorder prediction 32 58 - -
Spst8g01251 329 MobiDBLite consensus disorder prediction 234 304 - -
Spst8g01251 329 Gene3D AP2/ERF domain 142 200 IPR036955 GO:0003700|GO:0006355
Spst8g01251 329 PRINTS Ethylene responsive element binding protein signature 165 181 IPR001471 GO:0003700|GO:0006355
Spst8g01251 329 PRINTS Ethylene responsive element binding protein signature 143 154 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01251 Spst-Chr8 11559318 11560307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01251 1 329 AP2-EREBP Transcription Factor Family AT1G78080 49.719 2.02e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst8g01251 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01251 K09286 - gmx:100802961 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01251 8 11559318 11560307 Spst9g01193 9 11074778 11075839 PCT