Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01229 ATGGCTTACCCACATTACCGATCACAGTTCGGAGATACAACGTTCACTAAGGTCTTCGTTGGAGGCCTAGCTTGGGAGACTCCAACCGAAGAAATGCGCAAATATTTTGAGCAGTTTGGTGACATTCTTGAAGCTGTCATTATCACTGATAAGAACACAGGAAAATCTAAAGGCTACGGATTCGTAACATTCCGTGATCCAGAATCAGCTAGAAGGGCATGTGCTGATCCAAACCCAGTGATAGATGGAAGAAGAGCAAATTGCAACATTGCTTCTCTAGGAAGACCTAGACCATCACCACCAAGAGGAAGAGGTACATTCCAGGGAGGAGCACCAGGAACAGCTTCATACAGTGGTGTGCCGTCGGCAGGACCACCGGCACTAGCACCGCCGCCGCCGCCACCACCACCGCTGGTGTACCCGCCATATGGCTACCCTACCTACACCCCTGATTATGGGTACCATCAAGCCACATTGTATAACCCACAAATTCAGCCACCACAATACTACCAACAACTCTATGGACCATCATCCTCCACCATGGGTTCCCCATATTACTATGGCTATTCTGTGCAAGCACCAAGAGGTACCTTTTCTACACCCCAACCACATCGCATACCAGCTGGACCCTCCTATCTATACTACCCTACGCCAATGGAAGGCTCATTTTCTGCATATCGTCCACCACCTCAATTGCAACAACTACCAATAAGGCAACCCCCTCCTTCCCCTAGTGACTCACAGACTCAGCAACGTACCTCGTCCGAGGCAGCAGGTGGAGTAGTTATAACTTCAGAAAGTTCAAATACCCAAGGGAGGAACTGA 825 0.4933 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRGTFQGGAPGTASYSGVPSAGPPALAPPPPPPPPLVYPPYGYPTYTPDYGYHQATLYNPQIQPPQYYQQLYGPSSSTMGSPYYYGYSVQAPRGTFSTPQPHRIPAGPSYLYYPTPMEGSFSAYRPPPQLQQLPIRQPPPSPSDSQTQQRTSSEAAGGVVITSESSNTQGRN 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01229 274 SUPERFAMILY RNA-binding domain, RBD 9 118 IPR035979 GO:0003676
Spst8g01229 274 PANTHER BOULE-RELATED 6 252 - -
Spst8g01229 274 MobiDBLite consensus disorder prediction 244 274 - -
Spst8g01229 274 FunFam RNA-binding protein 24-B isoform X1 3 112 - -
Spst8g01229 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Spst8g01229 274 MobiDBLite consensus disorder prediction 222 274 - -
Spst8g01229 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Spst8g01229 274 Gene3D - 3 111 IPR012677 -
Spst8g01229 274 SMART rrm1_1 17 89 IPR000504 GO:0003723
Spst8g01229 274 MobiDBLite consensus disorder prediction 91 135 - -
Spst8g01229 274 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01229 Spst-Chr8 11302014 11306453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01229 12 92 C2H2 Transcription Factor Family AT2G19380 39.506 4.67e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01229 K25006 - gmx:100787086 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01229 8 11302014 11306453 Spst8g01229 8 11302014 11306453 ECH
Spst8g01229 8 11302014 11306453 Spst9g01163 9 10657708 10660855 PCT