Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01228 ATGAATCAAAACCAGCTTCAGCCCCTGCCTCTGCTTAGTAGCTTCCTAGGTTCATCTCCCCAAGAAGCTTTGCTACAAAACCAAAACCCTAAAGCATACCATGGTCAAGTTGAGGACGTCACTGTGGCCTTACACATAGGCCTCCCCAACAATTCAAGTGGCTCCACCAATAATCATGGATTTGTGAATGCCACTACTCAAGTTCCTAGCAACTACTGGATACCAACTCAAGAACAGATCCTCATTGGGTTTAGCCATTTCTCTTGTCCTGTCTGCCTCAAAACCTTCAACCGCTACAACAATCTTCAGATGCATATGTGGGGGCACGGGTCACAGTATCGCAGAGGCCCAGACTCGCTGAAGCGAACTCATCCACGACCGTTGTTGGACATTCCCTGCTACTGTTGCTCCAGAGGATGCAAGAACAACATCGATCACCCACGTGCGAAGCCTCTCAAGGACTTCCGCACCCTTCAGACGCACTTCAAGAGGAAGCACGGCGCCAAGCCCTTCACGTGCCGCAAGTGCGCCAAGCCTTTGGCCGTCAAAGGTGACTGGCGAACCCATGAGAAAAACTGCGGCAAACGCTGGCTCTGCATTTGTGGCTCCGACTTCAAACATAAGAGGTCCCTCAAAGACCACATCAAAGCCTTTGGCTTTGGTCACACCCCTTTCTCTTCTTCCTCTGATGCCATGTAA 699 0.5064 MNQNQLQPLPLLSSFLGSSPQEALLQNQNPKAYHGQVEDVTVALHIGLPNNSSGSTNNHGFVNATTQVPSNYWIPTQEQILIGFSHFSCPVCLKTFNRYNNLQMHMWGHGSQYRRGPDSLKRTHPRPLLDIPCYCCSRGCKNNIDHPRAKPLKDFRTLQTHFKRKHGAKPFTCRKCAKPLAVKGDWRTHEKNCGKRWLCICGSDFKHKRSLKDHIKAFGFGHTPFSSSSDAM 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01228 232 PANTHER ZINC FINGER PROTEIN WIP2 9 226 IPR043584 GO:0003700|GO:0010468
Spst8g01228 232 Gene3D Classic Zinc Finger 149 220 - -
Spst8g01228 232 Gene3D Classic Zinc Finger 86 109 - -
Spst8g01228 232 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Spst8g01228 232 FunFam zinc finger protein WIP2-like 86 109 - -
Spst8g01228 232 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Spst8g01228 232 SUPERFAMILY beta-beta-alpha zinc fingers 82 109 IPR036236 -
Spst8g01228 232 FunFam Zinc finger protein WIP2 140 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01228 Spst-Chr8 11295066 11296926 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01228 1 227 C2H2 Transcription Factor Family AT1G34790 58.233 1.02e-99 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst8g01228 zf-C2H2_6 6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01228 - - var:108336851 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01228 8 11295066 11296926 Spst8g01228 8 11295066 11296926 ECH