Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01226 ATGAAACTTAACTTGACAGGATTTGTCAATAGAATAAGAAATGTGAAGCGATCACCGTCGGACTGGAAAGATGCCGGAGAATTTATAGGACAAGATGTTCTACCAATATTCATAGCAGCTAGATGTTTATTTGGACTCTCACTTTTGCTACTGCTATTCGTCTATAAATGGCGACGAAGACATTTTTCAGTGTATGAAAACATTGAAAACTTTTTGTTGGACATCAATATAAATCCCATTAGATACGAATACAGAGAAGTAAAGAAAATGACTAAAGGTTTCAAAGTGAAATTAGGTCAAGGAGGTTTTGGTTCTGTGTACAAGGGAAAGCTTCAAAGTGGGTTAGATGTAGCAGTAAAGATGTTGAACAAATCCAAAGATAACGGACAAGAGTTTGTTAATGAAGTGGCTACCATTGGAAGAATACATCATGTGAATGTGGTAGGTCTTATTGGATATTGTGTTGAAGGAAAGAGGCGTGGTTTAGTTTATGAATACATGTCTAATGGGTCATTGGATAAATACATTTTCTCTAAAGAAGGAAGTGTTCCTCTAAGTTATGAGAAGATATATGAAATATCTCTTGGAATTGCTCATGGGATGGCATATCTACATCGAGGTTGTGATGTGCAGATTTTACATTTTGATATCAAACCTCATAATATTCTTTTAGATGACAATTTTACTCCAAAAGTTTCAGATTTTGGACTTGCAAAGTTATATCCTACAAAAGACAGATCTATTATTTTAACTGCAGTAAGAGGAACGTTGGGCTACATGGCTCCAGAATTATTCTACAAAAATATAGGTGGAGTTTCTTATAAGGCTGATGTCTATAGTTTTGGAATGCTTTTGATGGAAATGACAAGTAGGAGGAAAAACTCAGATCCTCATGCAGAGCATTCAAGCCAGCATTACCTCCCCTTTTGGATCTATGATCAATTTAAAGAAGAAAAAGATATTGACATGGAAGGTGCTTCGGAAATGGACAAGATTCTAATGAAGAAAATGTTTATAGTTGCACTTTGGTGTATACAATTAAAACCAAGTGATCGGCCATCAATGAGCAAGGTTGTAGAGATGCTTGAAGGAAACATTGAAAGTCTTGAAATTCCTTCCAAACCTTCTTTTTGTCCCCATGAAATCTTTGAACATGATGATACACTCAACTCTGACGAAATATCATGGAGTGATTCAACTAGTTCTAATGTGAATATTGGCCAAAACATGCCTAATCAATAA 1242 0.3527 MKLNLTGFVNRIRNVKRSPSDWKDAGEFIGQDVLPIFIAARCLFGLSLLLLLFVYKWRRRHFSVYENIENFLLDININPIRYEYREVKKMTKGFKVKLGQGGFGSVYKGKLQSGLDVAVKMLNKSKDNGQEFVNEVATIGRIHHVNVVGLIGYCVEGKRRGLVYEYMSNGSLDKYIFSKEGSVPLSYEKIYEISLGIAHGMAYLHRGCDVQILHFDIKPHNILLDDNFTPKVSDFGLAKLYPTKDRSIILTAVRGTLGYMAPELFYKNIGGVSYKADVYSFGMLLMEMTSRRKNSDPHAEHSSQHYLPFWIYDQFKEEKDIDMEGASEMDKILMKKMFIVALWCIQLKPSDRPSMSKVVEMLEGNIESLEIPSKPSFCPHEIFEHDDTLNSDEISWSDSTSSNVNIGQNMPNQ 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01226 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Spst8g01226 413 CDD STKc_IRAK 98 364 - -
Spst8g01226 413 FunFam serine/threonine-protein kinase PBS1-like 63 166 - -
Spst8g01226 413 ProSiteProfiles Protein kinase domain profile. 92 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g01226 413 SMART serkin_6 92 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g01226 413 ProSitePatterns Protein kinases ATP-binding region signature. 98 120 IPR017441 GO:0005524
Spst8g01226 413 Gene3D Phosphorylase Kinase; domain 1 72 166 - -
Spst8g01226 413 Pfam Protein kinase domain 96 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g01226 413 PANTHER RUST RESISTANCE KINASE LR10-RELATED 65 382 IPR045874 GO:0004672
Spst8g01226 413 SUPERFAMILY Protein kinase-like (PK-like) 77 363 IPR011009 -
Spst8g01226 413 FunFam PR5-like receptor kinase 167 374 - -
Spst8g01226 413 PIRSF TyrPK_CSF1-R 10 181 - -
Spst8g01226 413 PIRSF TyrPK_CSF1-R 173 409 - -
Spst8g01226 413 Gene3D Transferase(Phosphotransferase) domain 1 167 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01226 Spst-Chr8 11289940 11291181 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01226 81 395 Receptor kinase-like Gene Family AT5G38280 50.000 9.42e-104 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Spst8g01226 Pkinase 4.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01226 - - var:108336466 662.144