Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01224 ATGCTCAATTTTCTGAAATCGTCTCTTCTATTGACGTTGTTGTTTCTGGTAGGCGAGCCTGCGATGGGCAAGAACCACTGCACGGATAAATGTGGGCATGTTCGTATTCAATTTCCATTTTATCTCATAAACAAGAAGCAAACCACTGACTACCCCCCTGAGTTTGGTCTGTTATGCACCCAAAAAAACGAGGCTATGATGGAGCTACCTGCTGTTCCAATAAAATTGTTTGTCAGAAACATCGATTACAAATCTCAGCAAATTGAAATATATGACCCACAAAATTGCCTTGTCGGTCAACTCTTGAAACTCGGGAACGCATCCATTTCTCCATTCCAATTCCATACATATGATTATGGTCCTAAAAAGTTTAACGTTTCTTTCTTCCATTGCGACTCACTGTCGTGCCCTATTTTGGTACAAGAATCCGACAACGAGGTCACTGACCCCCAACTAATATCCTGCACGAAGCTGAAAGATGTTTTGTCCGTCAAGTGGATGAGTTCGTATTATGCGGAGATGTTGGTTATGGAATGGTCGAAACCTCATTGTCGATACTGTGAAGCACGAGGCCAGAAGTGTAAATGGAAGAATGGTACTAACGGTGGAACTGAATGTTCCATTTGCAGAACAAAAAGGATTCCAGCATCAACTATTGTACTCATTGCTGCAGGAGGAGTAGTTGGTTTGATAATTTTTCTGCTACTGGTCAAGGCATTGTTTTATGTATATGACTATTATGAGAAGAAGGAAGAAGACCGGGCTCGAATAGAGAAATTCTTGAAGGATTACAGGGCAATGAAGCCTACCAGATTCACTTACGCTGACATCAAGAGAATTACAAATGGGTTCTGTGAGAGTTTGGGGGAAGGAGCGCATGGAGCAGTGTTCAAAGGAATGCTCTCCCGTGAAATTCTTGTTGCTGTAAAGATACTCAAAGACACAGTGGGAGATGGGAAAGATTTCATAAATGAAGTGAGAGCCATTGGGAAAATTCATCATGTTAACGTTGTTCGCTTGCTTGGTTTCTGTGCAGATGAGTTCCACCGTGCTCTTGTCTACGATTTCTTTCCAAGTGGGTCGCTGCAGAGATTCTTGGCTCCACCAGACAACAAGGATGTTTTCCTTGGTTGGGAGAAGTTGCAACAAATTGGTCTTGGTGTTGGCAGAGGAATTGAGTACCTCCACCTTGGGTGTGATCATAGAATACTTCACTTTGATATTAATCCTCACAATGTTTTGCTAGATGACCTTTTCGTCCCAAAAATCACTGATTTTGGACTTGCCAAGTTGTGTCCAAAAAATCAAAGCACGGTGTCTATGACTGCAGCCAGGGGAACTTTGGGCTATATTGCCCCTGAAGTTTTCTCTCGGAACTTTGGTAATGTGTCTTACAAGTCTGACATTTACAGCTATGGAATGTTGCTGTTAGAAATGGTTGGAGGAAGAAAGAATACCAATGTGTCAGTTGAGGACAGTTTCCAAGTTCTGTACCCAGAGTGGATCCATAATTTGCTGGAAGGCGGAGACGTGCAAATTAGCATTGAGGATGAGGGAGATGCTAAAATTGCCAAGAAACTTGCCATTGTAGGACTTTGGTGCATTCAATGGAACCCAGCGGACCGTCCTTCCATGAAAACTGTGGTACAAATGCTTGAAGGGAACGGAGATGAGTTAACAGCACCCCCTACTCCTTTCGACATCTCCGGTTCTTCTAGAACACATGCCGTTGTTTCGCCAAGACATCAAAATTTTGAGTTGGAAGTTATTCATGAAATAGACGAAAACAATGTCGATCACTTTTAG 1806 0.4258 MLNFLKSSLLLTLLFLVGEPAMGKNHCTDKCGHVRIQFPFYLINKKQTTDYPPEFGLLCTQKNEAMMELPAVPIKLFVRNIDYKSQQIEIYDPQNCLVGQLLKLGNASISPFQFHTYDYGPKKFNVSFFHCDSLSCPILVQESDNEVTDPQLISCTKLKDVLSVKWMSSYYAEMLVMEWSKPHCRYCEARGQKCKWKNGTNGGTECSICRTKRIPASTIVLIAAGGVVGLIIFLLLVKALFYVYDYYEKKEEDRARIEKFLKDYRAMKPTRFTYADIKRITNGFCESLGEGAHGAVFKGMLSREILVAVKILKDTVGDGKDFINEVRAIGKIHHVNVVRLLGFCADEFHRALVYDFFPSGSLQRFLAPPDNKDVFLGWEKLQQIGLGVGRGIEYLHLGCDHRILHFDINPHNVLLDDLFVPKITDFGLAKLCPKNQSTVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTNVSVEDSFQVLYPEWIHNLLEGGDVQISIEDEGDAKIAKKLAIVGLWCIQWNPADRPSMKTVVQMLEGNGDELTAPPTPFDISGSSRTHAVVSPRHQNFELEVIHEIDENNVDHF 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01224 601 Gene3D Phosphorylase Kinase; domain 1 256 356 - -
Spst8g01224 601 FunFam PR5-like receptor kinase 357 562 - -
Spst8g01224 601 ProSitePatterns Protein kinases ATP-binding region signature. 288 310 IPR017441 GO:0005524
Spst8g01224 601 Pfam Protein kinase domain 286 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g01224 601 Gene3D Transferase(Phosphotransferase) domain 1 357 561 - -
Spst8g01224 601 ProSiteProfiles Protein kinase domain profile. 282 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g01224 601 Pfam Wall-associated receptor kinase galacturonan-binding 27 92 IPR025287 GO:0030247
Spst8g01224 601 FunFam serine/threonine-protein kinase PBS1-like 248 356 - -
Spst8g01224 601 PANTHER RUST RESISTANCE KINASE LR10-RELATED 252 571 IPR045874 GO:0004672
Spst8g01224 601 SUPERFAMILY Protein kinase-like (PK-like) 264 553 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01224 Spst-Chr8 11284602 11286540 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01224 247 565 Receptor kinase-like Gene Family AT1G66980 48.624 4.43e-98 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Spst8g01224 Pkinase 7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01224 - - var:108338466 949.503