Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01194 ATGGCCAACGAACACAGAAAACTCTTCCCAGATGAAACAACAACCACAAACCAAACCCAAACACAGGATTGCTATGGCTTATGTGACCCTGCATGCCCTTACAACTGCTACTCTAACCAAGACTACTTCTTCTCTCCACCGCCACCATCTATTTCACACTCGACACAAGTTAACCACATATCCTCCTACTTGATCATCCTCGTGACACTCTTCACGGTCATTTTTGTTGTCATTTCTTTCTACGTGATCAAAGTGAAGTGCTATGCTGCATGGTGCGGGTGGAGGGTCAACGGATCAGTTCCCTCTCAATCAGACACCACCACTGAGGAGTTTCTCAATGAGAACCAAGTTGACCACCCCGTGTGGCTCATTGCCACGGTGGGGTTGCAACAATCCGTCATAAACTCCATCACGGTGTGCAAGTACAAAAAGAACGAAGGGTTGATTGAAGGAACCGAGTGTTCGGTGTGTTTGAACGAGTTCCAAGAGGAAGAGGCCTTGAGACTCTTGCCAAAGTGCAACCATGCTTTTCACATCCCTTGCATTGACACTTGGTTGAGATCACACACCAATTGTCCTCTTTGTCGCGCCGGTATTGTCTCTAACAGTGTCACTTCTGAAGCACCCGTGTCGAATTTGGAGCAAGAGAATGCAAATTTGAGAAGAAATCAAGAGACCCTTACGGAGAATTCAAGGACCGAAGGTTTGTTAAGCAGCAACATGGTTGCAGGGGAATCGAGTGAAGCACTAGAGTTGGTTGATGAATCAAATTCCAAGGATCCGGTGAATGATCGAACTCAGAACCATCACGTGCTGGATATTGAGATTCAAACAGAAATGGGATCTGTTTCAACGACAGAATCTGAGAGTCATCATGTTGGCGATGATCATAAACATGATGAAACACACTTGCGCGCTGTTAATCTACGGAAGCAAGAGAAAGACGGTGATTACTATCCAAAAATGTGTAAAACAATGCGTCGTTGTTCCTCTATTGAAGAGTGTTTGCATCTAAGCCCGGTTTCCATGAAAAGATCATTCTCCTGCAATGGAAGATTTCTAACTTCGAGAGGTTGCGTGACATTAAACTCTAAACTCCATTCATCCCTACTAGAAATTTCAATCTATTAG 1131 0.4456 MANEHRKLFPDETTTTNQTQTQDCYGLCDPACPYNCYSNQDYFFSPPPPSISHSTQVNHISSYLIILVTLFTVIFVVISFYVIKVKCYAAWCGWRVNGSVPSQSDTTTEEFLNENQVDHPVWLIATVGLQQSVINSITVCKYKKNEGLIEGTECSVCLNEFQEEEALRLLPKCNHAFHIPCIDTWLRSHTNCPLCRAGIVSNSVTSEAPVSNLEQENANLRRNQETLTENSRTEGLLSSNMVAGESSEALELVDESNSKDPVNDRTQNHHVLDIEIQTEMGSVSTTESESHHVGDDHKHDETHLRAVNLRKQEKDGDYYPKMCKTMRRCSSIEECLHLSPVSMKRSFSCNGRFLTSRGCVTLNSKLHSSLLEISIY 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01194 376 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Spst8g01194 376 FunFam RING-H2 finger protein ATL54 129 202 - -
Spst8g01194 376 Coils Coil 210 230 - -
Spst8g01194 376 PANTHER RING-H2 FINGER PROTEIN ATL16 43 348 IPR044600 GO:0016567|GO:0016740
Spst8g01194 376 CDD RING-H2_EL5-like 153 196 - -
Spst8g01194 376 Pfam Ring finger domain 153 196 IPR001841 -
Spst8g01194 376 SMART ring_2 154 195 IPR001841 -
Spst8g01194 376 SUPERFAMILY RING/U-box 144 202 - -
Spst8g01194 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 205 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01194 Spst-Chr8 10958137 10959267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01194 4 206 C3H Transcription Factor Family AT1G72220 48.936 5.33e-64 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01194 - - gmx:100805705 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01194 8 10958137 10959267 Spst8g01194 8 10958137 10959267 ECH