Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01193 ATGGCCCTCCAGGCCGTGGTTTTCCCACAAGATCCATTCGCTTACCCTTGCAACAAAGACTACATGTACTCGCTGGTAGAAAACAATTTCCAAGTAGCAGAAAACAAAGCCCTTGTGGGAATCATCAGCAACAACATCGACCACACTCTGCATGCAAATTGGGATTCTTCTTCTCCTTCAGCTTTGCAAAATGTCAAAGACCAATGGGACTCACACTCCTCCCCTGAACCCTGCACCGTCGATCACTCCCTCCCCGCCGCTTTCCCTCCCCCTCCGTCCTCCACTGACGCCCCCACCGGCCGCCGCAAACGCCGCCGCACCAAGAGCGCCAAGAACAAGGAGGAGATAGAGAATCAAAGGATGACCCACATTGCAGTTGAACGCAATCGGAGGAAACAGATGAACGAGTACCTAGCTGTTCTTAGATCCTTGATGCCACCCTCTTATGTCCAAAGGGGTGATCAAGCATCTATTATTGGTGGCGCCATTAACTTCGTGAAGGAGCTGGAGCAGCTTCTGCAGTGCATGAAGGGTCAGAAGAGAACAATGGAAAATGGTGGTGGCTTCTCTGACTCATCACCCTTTGCTGAGTTCTTCATGTTCCCTCAGTACTCAACACGTGCGACACAGAGCAGCAGAGGCTACCCTGGCACGTGCGAGACACGGAACAATTCATGGGGCGTGGCAGACATAGAAGTGACCCTGGTGGATGGCCATGCCAACATAAAGATACTCTCCAAGAAACGACCAGGCTTGCTTCTGAAGATGGTAGTTGGCCTTCAAACTCTTGCCTTCACCATTCTCCACCTTAATGTTACCACTGTTGACGATATGGTCCTTACCACAGTTAGTGTCAAGGTAGAGGAAGGGTGTGAGTTGAACACGGTGGATGAAATTGCAGGCGCTGTGCATGAATTATCCCGCACGGTGGAGGAGGAAGCTGTTTTGAGCAGATGA 957 0.511 MALQAVVFPQDPFAYPCNKDYMYSLVENNFQVAENKALVGIISNNIDHTLHANWDSSSPSALQNVKDQWDSHSSPEPCTVDHSLPAAFPPPPSSTDAPTGRRKRRRTKSAKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQCMKGQKRTMENGGGFSDSSPFAEFFMFPQYSTRATQSSRGYPGTCETRNNSWGVADIEVTLVDGHANIKILSKKRPGLLLKMVVGLQTLAFTILHLNVTTVDDMVLTTVSVKVEEGCELNTVDEIAGAVHELSRTVEEEAVLSR 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01193 318 MobiDBLite consensus disorder prediction 57 115 - -
Spst8g01193 318 Gene3D - 108 185 IPR036638 GO:0046983
Spst8g01193 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 118 169 IPR011598 GO:0046983
Spst8g01193 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 118 184 IPR036638 GO:0046983
Spst8g01193 318 CDD bHLH_AtFAMA_like 121 194 - -
Spst8g01193 318 MobiDBLite consensus disorder prediction 57 78 - -
Spst8g01193 318 Coils Coil 166 186 - -
Spst8g01193 318 FunFam Basic helix-loop-helix transcription factor 109 184 - -
Spst8g01193 318 Pfam Helix-loop-helix DNA-binding domain 119 170 IPR011598 GO:0046983
Spst8g01193 318 SMART finulus 124 175 IPR011598 GO:0046983
Spst8g01193 318 PANTHER MAX DIMERIZATION, MAD 69 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01193 Spst-Chr8 10949779 10951257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01193 1 287 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 49.051 3.84e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst8g01193 HLH 6.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01193 - - gmx:100797856 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01193 8 10949779 10951257 Spst8g01193 8 10949779 10951257 ECH
Spst8g01193 8 10949779 10951257 Spst9g01137 9 10433149 10434282 PCT