Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01191 ATGAGCATGCAAAAGGAGAGTCCTCTCGTTAGACTCCACAGTTTCGACCAAGGCCATGCATGGCTCGCTCTGTTGCACCTTCTCATTCACATGTCACCGCCTGTAACTGGTCAACAGGTAACCCCAGCAATAGAACCCGACAACAACAAATCCGTGGTCACCATCATGGCCATCATCGCCATAATGTTCCTCATCTCAGCCTTACTCTCCCTCTACTCTCGCAAATGCTCCGACAGACAAGCCCAGACACGTGGCATTCTCGACCGCGCCCCACCAACCGGCGCAATCGGTAACCCGTCATCGCAAAGCGAGTCCAACGGTCTCAACCAAGCCACCATAGAAACCTTCCCCACATTCCTCTACTCCGACGTGAAGGGTTTCAAAATCGGGAAAGACACGTTGGCATGCGCTGTGTGCTTGAACGAGTTTCAAGACGATGAAACCCTTCGCATGATCCCCAAATGTTGCCACGTCTACCACCCTGATTGCATCGATGTCTGGTTAACTTCTCACTCCACTTGTCCTGTGTGTCGTGCCAACCTCGTTCCTCAACCTGAAGACATAAACATGAGCACGAACATGCTACCTATGTTGTCAATTCAGGTACCCGATGAACATGAGCATGAAGACGAAAGTGCTGAACATGAACACGAGAGTGTTATTAGTGAGGAACAGAAAAGAGAGCATGCCGACGTGGAATCACCCAAGGTGGATTTGCTTCGGAGGATACACACGTTGCATCAGAGTCGTCCATCACGGTCAAAATCCACGGGGTTCTTATCCACTCTCTTGTTTCCGCGATCGAACTCAACGGGGCAATTGGCGCAGCAAGGGGAGAACTATGAGAGGTTTACGTTAAGGTTACCTGAGGAGGTACGAAGCCAGATGGTGAACTCGAGGCTTAAGCGTGCGAATAGTTATGCATGCTTTACGATGATGAGCAGTGGCACGTGGGGGTACAGGACGAGAAGCGTGGGGAGTGGACGTGGGAGAGGGTGTGTGCAGTACGAGAGGTTCAACGGTGAGGATCAATGGGGTTTCACTTTGACACCACCGAGCCTCATTAAAAACAGTTCGAATAGATCCTCCAGAAAATCACCGGTTCAATGCTCTGGTTTGATGTTGGATAATAATGTTGATGAGCGATCCTCCGAATTATTGCGTCTCGGGTAG 1173 0.5047 MSMQKESPLVRLHSFDQGHAWLALLHLLIHMSPPVTGQQVTPAIEPDNNKSVVTIMAIIAIMFLISALLSLYSRKCSDRQAQTRGILDRAPPTGAIGNPSSQSESNGLNQATIETFPTFLYSDVKGFKIGKDTLACAVCLNEFQDDETLRMIPKCCHVYHPDCIDVWLTSHSTCPVCRANLVPQPEDINMSTNMLPMLSIQVPDEHEHEDESAEHEHESVISEEQKREHADVESPKVDLLRRIHTLHQSRPSRSKSTGFLSTLLFPRSNSTGQLAQQGENYERFTLRLPEEVRSQMVNSRLKRANSYACFTMMSSGTWGYRTRSVGSGRGRGCVQYERFNGEDQWGFTLTPPSLIKNSSNRSSRKSPVQCSGLMLDNNVDERSSELLRLG 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01191 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 183 IPR013083 -
Spst8g01191 390 CDD RING-H2_EL5-like 136 178 - -
Spst8g01191 390 PANTHER RING FINGER DOMAIN-CONTAINING 39 186 - -
Spst8g01191 390 MobiDBLite consensus disorder prediction 87 107 - -
Spst8g01191 390 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Spst8g01191 390 MobiDBLite consensus disorder prediction 204 235 - -
Spst8g01191 390 Pfam Ring finger domain 135 178 IPR001841 -
Spst8g01191 390 SMART ring_2 136 177 IPR001841 -
Spst8g01191 390 SUPERFAMILY RING/U-box 130 187 - -
Spst8g01191 390 FunFam E3 ubiquitin-protein ligase ATL6 97 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01191 Spst-Chr8 10938022 10939194 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01191 22 364 Rapid Response to Elicitors AT3G05200 36.415 7.62e-51 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01191 K10664 - gmx:100814384 550.436