Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01189 ATGGGCATCCACACGGAATGCCCTGCACCTCCATGTTACCGGCTGTTTATGAATCTGGATCATGATCCTGCTTGTTTTTTCCTTCTCCTCCTCCTTCTCGTTCCGCCAGTCAAGGCACAGTTTCAAGACCCGCCGCCGCCACCGTCGTCGTTGGATCCTTTCACGAGGCTGAGGTTCGACAAGACCATGGCTGCAGTTCTGGTTATCCTCGTCGTGGTGTTCTTCGCGTTGGGATTCGTCTCCATCTACACGCGTCAATGCGCGGAGCGGCGGATCAGGGGGAGGCTCGACCTCGCGGTGGCGATGACCGGAGGCATAGAGCAGCGGCAGCACCACGGGCTCGACTCGGCGATCGTGGACACGTTCCCGACGTTCGTGTACTCCGAGGTCAAAGCCCTAAAGATCGGGAGGGCCACGCTGGAATGCGCAGTGTGTCTTAATGAGTTCCACGACGACGAAACACTGCGTTTGATCCCCAGATGTTGCCACGTGTTTCACTCGGATTGCATCGACGCGTGGTTGGTGAATCACTCCAGTTGTCCCGTTTGCCGCGCCAACCTCGCACCCAAGCCCGAGGACGCGCCTCCTTCCCTTGAGATTCACATTCCGGACCCGGCCCGGCCCAATGGGCCACAAGCAGAGGCCGATTATGATCCCAATTACATCAACCCGGGCAATGAAGGTGAAGGTGAACGAAACAGAACAGTTACCGAGCCTCCTAGTTTAGATGATCCCAACCGGACCCGTCCGGTTCGGTCTAGATCTACCGGGTTTGCAATTTCCAGGCTGTTTCCTCGATCTCACTCAACGGGTCACTCGCTTGTTCGGCAGGGAGAAGACTGCGAGCGGTTTACACTGCGGTTGCCAGAAGATGTGCGGAACCGGCTCATGAGTTCTGGGACGCTGAACCGGACCAAGAGTTGTGGGGTGACGTGGCTGCGGCAGAGTAGTGGAAGGAGGGGTTACCGAACAAGGAGCGTGGGGAGAAGATATCTGCAATACGAGCGGTTCGGTGAGGAAGGCCGGTTGGACCGGTGGGGGTTCATGTGGACCCCACCGTTTTGGGGTAGGACCGGTTCGGGGAGATCATCAAAGTCAACGAGGATGAAGGATGAAGTGGACGTGGAAGAACGTTCCTCAGAACGCTTATTTTCCAAGGATTGA 1164 0.5704 MGIHTECPAPPCYRLFMNLDHDPACFFLLLLLLVPPVKAQFQDPPPPPSSLDPFTRLRFDKTMAAVLVILVVVFFALGFVSIYTRQCAERRIRGRLDLAVAMTGGIEQRQHHGLDSAIVDTFPTFVYSEVKALKIGRATLECAVCLNEFHDDETLRLIPRCCHVFHSDCIDAWLVNHSSCPVCRANLAPKPEDAPPSLEIHIPDPARPNGPQAEADYDPNYINPGNEGEGERNRTVTEPPSLDDPNRTRPVRSRSTGFAISRLFPRSHSTGHSLVRQGEDCERFTLRLPEDVRNRLMSSGTLNRTKSCGVTWLRQSSGRRGYRTRSVGRRYLQYERFGEEGRLDRWGFMWTPPFWGRTGSGRSSKSTRMKDEVDVEERSSERLFSKD 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01189 387 MobiDBLite consensus disorder prediction 193 252 - -
Spst8g01189 387 FunFam E3 ubiquitin-protein ligase ATL6 102 190 - -
Spst8g01189 387 SUPERFAMILY RING/U-box 123 196 - -
Spst8g01189 387 SMART ring_2 142 183 IPR001841 -
Spst8g01189 387 MobiDBLite consensus disorder prediction 364 387 - -
Spst8g01189 387 CDD RING-H2_EL5-like 141 184 - -
Spst8g01189 387 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Spst8g01189 387 PANTHER RING FINGER DOMAIN-CONTAINING 39 192 - -
Spst8g01189 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 190 IPR013083 -
Spst8g01189 387 MobiDBLite consensus disorder prediction 356 387 - -
Spst8g01189 387 Pfam Ring finger domain 141 184 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01189 Spst-Chr8 10902521 10903684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01189 27 364 Rapid Response to Elicitors AT3G05200 40.223 2.85e-65 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01189 K10664 - gmx:100815982 553.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01189 8 10902521 10903684 Spst8g01189 8 10902521 10903684 ECH
Spst8g01189 8 10902521 10903684 Spst9g01135 9 10414790 10415881 PCT