Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01177 ATGGAATTCGACGACCAAGAGGACCAGGAGGAGGAAATGGGGTTGCCGGAGTCGGCCGTGGCGGCGGCGGCGCCAAGTTACGACTTAGGGAACTCAGCGGCGCGGTCTAAAATCGGAGGCGAAGGGCAGAAGGGTGCGTTTGGTGCTTCGGTGGTACGGTACCGAGAATGCCAGAAGAACCACGCTGTGAGCTTCGGCGGCCACGCCGTCGACGGCTGCTGCGAGTTCATGCCGGCCGGCGAGGATGGCACTCTGGAGGCTGTGATTTGCGCCGCCTGCAACTGCCACCGGAATTTCCACCGCAAGGAGATCGACGGCGAGATGACCTCCCTCCACCACCGCGCTCAGCCGCCACCGCCGCTGCACCACCAATTCTCCCCGTACTACGCCCACCGCGTCCCACAGCACCCTTCCGCCGCCGGCTACTTCCACCCCCACATCGCTACTCCTCCGATGGTGCAGCACCGCCCGCTCCCCCTCCCCGCGGCCGCATCCGGCGGCGGTATCAGCCGCGAAGACGAAGACATATCGAATCCGAGCAGCAGCGGTGGAGGAGGTGGCGGCGGCGGCGGCGGGGGATCCAAAAAACGGTTCAGAACGAAGTTCACGCAGGAACAAAAGGATAAGATGCTTGCATTCGCTGAACAGCTAGGGTGGAGAATCCAGAAGCACGATGAATCTGCTGTGGAGCAGTTCTGTGCTGAGACCAATGTGAAGCGAAACGTTCTCAAAGTTTGGATGCACAATAACAAGAACACTCTCGACTTGATTACGTTTCAGCATGTCGCGAAATGGCTTGCAGATTTATCAGTAGAAGGAGGTGGTCACAGATTCCCTTTCCCTTTCTCTGTTTCCGGTTGCTGGGTTGATGAGTAA 876 0.5947 MEFDDQEDQEEEMGLPESAVAAAAPSYDLGNSAARSKIGGEGQKGAFGASVVRYRECQKNHAVSFGGHAVDGCCEFMPAGEDGTLEAVICAACNCHRNFHRKEIDGEMTSLHHRAQPPPPLHHQFSPYYAHRVPQHPSAAGYFHPHIATPPMVQHRPLPLPAAASGGGISREDEDISNPSSSGGGGGGGGGGGSKKRFRTKFTQEQKDKMLAFAEQLGWRIQKHDESAVEQFCAETNVKRNVLKVWMHNNKNTLDLITFQHVAKWLADLSVEGGGHRFPFPFSVSGCWVDE 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01177 291 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 37 254 - -
Spst8g01177 291 NCBIfam homeobox domain, ZF-HD class 195 252 IPR006455 -
Spst8g01177 291 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 54 103 IPR006456 -
Spst8g01177 291 MobiDBLite consensus disorder prediction 1 22 - -
Spst8g01177 291 MobiDBLite consensus disorder prediction 154 197 - -
Spst8g01177 291 FunFam Zinc-finger homeodomain protein 2 189 256 - -
Spst8g01177 291 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 53 104 IPR006456 -
Spst8g01177 291 Gene3D - 180 255 - -
Spst8g01177 291 SUPERFAMILY Homeodomain-like 181 253 IPR009057 -
Spst8g01177 291 Pfam ZF-HD protein dimerisation region 52 104 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01177 Spst-Chr8 10756123 10763902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01177 7 255 ZF-HD Transcription Factor Family AT4G24660 52.610 8.28e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Spst8g01177 ZF-HD_dimer 1.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01177 - - gmx:100776421 405.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01177 8 10756123 10763902 Spst8g01177 8 10756123 10763902 ECH
Spst8g01177 8 10756123 10763902 Spst9g01080 9 9585934 9587131 PCT