Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01159 ATGGCACCCAGTTTTGATTGCTTTTCAAGCCTTCTCTGTGCGGAAGACAACATTATTTTTGACGAAAATGATCGTGGGGGTTTGGTGGAGGAGTTGGGGGACACGTGGCAGCATCCGAGATATGATCGAAACCGTAGTCAAATTGAGAACTTGAATGTCCCGTATGAATCGTTTCCGTTGCCGACTGATGAGTGTTTGAGACTAATGGTGGAGAAGGAATTGCATCACTTGCCTAATGGTGATTATGTGAATAGACTGAGGAGTGGGGATTTGGACATTGGGGCCAGAAAAGAGGCCATTGATTGGATTGCAAAGGTCCGAGAGCACTTTGGTTTTGGACCCCTGTGTGCATATCTATCCATAAATTACTTGGACCGCTTCCTTTCTGTTTATGAATTACCAAAGCAACGAGCTTGGACAATGCAATTGTTGGCTGTGGGTTGCTTATCTCTGGCAGCCAAAATGGAAGAGATTGATGTTCCTACATCTCTTGATTTGCAGGAGGGTGAATCTAAGTATATATTTGAAGCCAAAACAATACAGAGAATGGAGCTTCTTGTTCTGAGCACATTGAAGTGGAGAATGCAGGCAATTACCCCATTTTCCTTCATTGACTATTTCCTTCAGAAGGTCAATGGTGATCAAGCTCCAATTGGTGATTCAATTTTGCAATCCACGGAGCTTATACTGAGTACTGTAAGAGGAATTGACTTCATAGAGTCCAGACCCTCAGAGATTGCAGCAGCAGTGGCAATATCTGTGGTGGGGGATGGCGGAGCAGTTCACACAGAGAAAGCAATTTCTGATCTGATTCAGCTCGTAGAAAAGGAGAGGGTCTTGAAGTGCGTTAAAATGATCCAAGAGCTGTCATCAAACAGTGGTTCTGCTAAGGATGCCAGTGCTTCGGTTTCTGTCCCGAGCATGCCTGAAAGCCCAATAGGGGTGTTGAACAATGCATGCTTCAGCTACAAAAGTGATGACCCAAATGCTCCTCCTTGTGCAAATTCTTCACATAATGATAGTCCAGATGCTAAAAGGAGGAAGCTAGACAAAACCTTTGGAGAATAA 1068 0.4419 MAPSFDCFSSLLCAEDNIIFDENDRGGLVEELGDTWQHPRYDRNRSQIENLNVPYESFPLPTDECLRLMVEKELHHLPNGDYVNRLRSGDLDIGARKEAIDWIAKVREHFGFGPLCAYLSINYLDRFLSVYELPKQRAWTMQLLAVGCLSLAAKMEEIDVPTSLDLQEGESKYIFEAKTIQRMELLVLSTLKWRMQAITPFSFIDYFLQKVNGDQAPIGDSILQSTELILSTVRGIDFIESRPSEIAAAVAISVVGDGGAVHTEKAISDLIQLVEKERVLKCVKMIQELSSNSGSAKDASASVSVPSMPESPIGVLNNACFSYKSDDPNAPPCANSSHNDSPDAKRRKLDKTFGE 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01159 355 ProSitePatterns Cyclins signature. 96 127 IPR006671 -
Spst8g01159 355 Gene3D - 67 284 - -
Spst8g01159 355 SUPERFAMILY Cyclin-like 60 195 IPR036915 -
Spst8g01159 355 FunFam D2/4-type cyclin 79 191 - -
Spst8g01159 355 MobiDBLite consensus disorder prediction 327 355 - -
Spst8g01159 355 PANTHER CYCLINS 65 291 IPR039361 -
Spst8g01159 355 CDD CYCLIN_AtCycD-like_rpt1 95 193 - -
Spst8g01159 355 SMART cyclin_7 101 189 IPR013763 -
Spst8g01159 355 Gene3D - 79 196 - -
Spst8g01159 355 FunFam D6-type cyclin 192 284 - -
Spst8g01159 355 Pfam Cyclin, C-terminal domain 198 297 IPR004367 -
Spst8g01159 355 SMART Cyclin_C_2 198 307 IPR004367 -
Spst8g01159 355 Pfam Cyclin, N-terminal domain 66 195 IPR006671 -
Spst8g01159 355 CDD CYCLIN_AtCycD-like_rpt2 198 286 - -
Spst8g01159 355 MobiDBLite consensus disorder prediction 340 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01159 Spst-Chr8 10318012 10320029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01159 66 334 Core Cell Cycle Gene Families AT2G22490 48.364 1.28e-84 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01159 K18810 - gmx:100803873 574.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01159 8 10318012 10320029 Spst8g01159 8 10318012 10320029 ECH