Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01147 ATGTTCTCAAAACTTCATCCACACCACCAACAGCAACAACATCAACTACAACCTTTTCAATTCTCTCGGGAATGTCAAACATCCGAGGACGATGACAGCCGGAGTAGCGGTGGGGCCAATCTTTCGGCCCAGAAGCCCGTCTCCACAGGCGATGAGGCAACTATTGAAGTAGTGCGGCGGCCCAGGGGCCGCCCTCCCGGTTCCAAAAACAAGCCCAAGCCGCCTCTTATTATTACACGCGAGCCCGAGCCCGCCATGAGTCCATTCATTTTAGAAATCCCTGGTGGAAACGACGTCGTTGAGGCCCTAGCGCGGTTCAGCCGAAGAAAGAATACGGGCCTGTGTGTTCTTACCGGTTCCGGAACCGTCGCCAACGTCACTCTCCGCCAACCCGCTGTAGCTCCCGCCGGCACCGTAACCTTCCACGGCCGCTTCGACATCCTGTCCATGTCCGCCACCTTCCTCCTCCACGCCTCCTCGTCACCAGCCGCCTCCTCCACCTTTGCCGTCTCGCTGGCGGGACCGCAGGGTCAGATCGTCGGCGGACACGTCGCTGGAAGGCTGCTCGCTGCTGCGACGGTGTTCGTCATCGCCGCGTCGTTCAACAATCCCTCCTTTCACCGGCTATCTTCGGAGGAGGACGCGCAAAATAACTCCGCGTCAGGCGGCGGTGGCGGTGACTCGTCGCCGCCTGCCTCCGGTGGCGGTGCGGAGAGCGGACACGTTCCGGCGGAGTCGTGTATGTATAGCTGTCACCTCCCTTCGGATGTGATTTGGGCTCCGACGGCGAGACCACCTTTCTGA 804 0.6032 MFSKLHPHHQQQQHQLQPFQFSRECQTSEDDDSRSSGGANLSAQKPVSTGDEATIEVVRRPRGRPPGSKNKPKPPLIITREPEPAMSPFILEIPGGNDVVEALARFSRRKNTGLCVLTGSGTVANVTLRQPAVAPAGTVTFHGRFDILSMSATFLLHASSSPAASSTFAVSLAGPQGQIVGGHVAGRLLAAATVFVIAASFNNPSFHRLSSEEDAQNNSASGGGGGDSSPPASGGGAESGHVPAESCMYSCHLPSDVIWAPTARPPF 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01147 267 Gene3D - 87 219 - -
Spst8g01147 267 FunFam AT-hook motif nuclear-localized protein 87 220 - -
Spst8g01147 267 PIRSF ESCAROLA 1 258 IPR014476 GO:0003680
Spst8g01147 267 MobiDBLite consensus disorder prediction 208 226 - -
Spst8g01147 267 CDD DUF296 88 198 IPR005175 -
Spst8g01147 267 ProSiteProfiles PPC domain profile profile. 83 222 IPR005175 -
Spst8g01147 267 MobiDBLite consensus disorder prediction 1 24 - -
Spst8g01147 267 SUPERFAMILY AF0104/ALDC/Ptd012-like 85 213 - -
Spst8g01147 267 Pfam Plants and Prokaryotes Conserved (PCC) domain 88 203 IPR005175 -
Spst8g01147 267 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 15 235 IPR014476 GO:0003680
Spst8g01147 267 MobiDBLite consensus disorder prediction 32 49 - -
Spst8g01147 267 MobiDBLite consensus disorder prediction 1 82 - -
Spst8g01147 267 MobiDBLite consensus disorder prediction 208 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01147 Spst-Chr8 10186782 10187585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01147 49 266 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 65.066 9.30e-95 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01147 - - gmx:100811053 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01147 8 10186782 10187585 Spst8g01147 8 10186782 10187585 ECH