Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01144 ATGCTTCCCTTTCGGAGATTCTACGGGTTCCAGAGTTGGCTAGACCACGACTCTACCCACGTCCCCATCTCGTTGATTAAAAGAGCGGTGGAGTTCCACGGCGCCGGATCAAAAACGGAGCGCAAATCAACGGAAGCATGCAAGAGTCACAGGGAAGCTGAGAGGAGACGCAGGCAGAGAATCAACTCCCACCTCTCCACCTTACGTTCTCTCCTTCCTCACGCCGCCAAGTCGGATAAGGCGTCGTTGCTGGCGGAAGTTGTTGACCATGTGAAACGGTTAAAGAAGCAGGCTGATGACGTGGCGTGCGCGAACGGCGGCGAAGCGGGTTCGGTTCGGTCTGAGGCGTGGCCGTTTCCTGGGGAGTGCGACGAGGCGACGGTGAGTTGCTGCGAGGGAGAGGTGCGGCGGGTAAAGGCGATGGTGTGCTGTGAGGACCGAGACGGTCTGAACCGGGACGTGACGCAGGCAATCCGTTCGGTTCGGGGGAAGCCGGTTCGCGCGGAGACGATGACGGTTGGGGGAAGGACGAAGAGTGTGGTGGTGGTGGAGTGGGGTGACGAGGTGGTGGAGGGAAAGGAGGTTGGGGCGCTGGACCGGGCTTTGAAGGCTGTGGTAGAGAATCGGGCTTTGGTGGGTTATGGAATGGGCCCAGTTGTTTTGGGCCAGAAACGGGGTAGGGATTGTTGCGGTTCGCCTAGTAGTGAAGTCGCCCAGTTATAA 723 0.5906 MLPFRRFYGFQSWLDHDSTHVPISLIKRAVEFHGAGSKTERKSTEACKSHREAERRRRQRINSHLSTLRSLLPHAAKSDKASLLAEVVDHVKRLKKQADDVACANGGEAGSVRSEAWPFPGECDEATVSCCEGEVRRVKAMVCCEDRDGLNRDVTQAIRSVRGKPVRAETMTVGGRTKSVVVVEWGDEVVEGKEVGALDRALKAVVENRALVGYGMGPVVLGQKRGRDCCGSPSSEVAQL 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01144 240 Gene3D - 39 102 IPR036638 GO:0046983
Spst8g01144 240 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 101 IPR036638 GO:0046983
Spst8g01144 240 PANTHER TRANSCRIPTION FACTOR BHLH30 34 227 IPR045847 GO:0003700|GO:0006355
Spst8g01144 240 SMART finulus 51 100 IPR011598 GO:0046983
Spst8g01144 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 94 IPR011598 GO:0046983
Spst8g01144 240 Pfam Helix-loop-helix DNA-binding domain 47 94 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01144 Spst-Chr8 10152190 10153274 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01144 42 207 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 46.286 4.91e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst8g01144 HLH 8.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01144 - - gmx:100816394 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01144 8 10152190 10153274 Spst8g01144 8 10152190 10153274 ECH