Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01143 ATGAACGCAACGCGCGCCGAAGCGGAGCGTCTCCTTGGGATCGCCGAGAAGCTTCTCCAGAACCGCGATTTAATGGGTTCGCGCGAATTTGCGATCCTCGCGCAGGAAACTGAGCCTCTTCTCGATGGTTCAGACCAGATCCTCGCCATCGTCGATGTGCTCCTCGCCGCCGATAAGCGCGTCAACAACCACCCGGACTGGTACGCCATCCTTCAGGTTGATCGGCGCTCCGATGACCTCGACCTCATAAAAAAGCAGTACCGCCGCCTCGCGCTCCTCCTCCACCCCGACAAGTCCCGCTTCGCCTACGCCGACCATGCCTTCAAGCTCGTCGCCGATGCCTGGGCGCTGCTCTCCGACCCTCTGAAGAAGTCTGTCTACGACAAAGACCTCTCGTTCTTCTCTCGCGTGGATTTGTCCGTGCCGGGATGGGTCCAGCAGGAAAAGCTTCCAGTTCGTAGGACTGGGCCCGGGCCCAACACCCGCAACAGCGCCTCGGCCCGCGGCGAGATTCACGCTGATGAAAACTCCCGCAGGAGAAACTCAACTTTCTGGACCGCGTGTCCCTATTGTTACCGTCTGTATGAATACCCTAGGGTTTACGAGAATTGTTGTCTACGGTGCCAGAATTGCGATAGATCCTTCCACGGCGTGGCGGTTCCGTCGCTGCCACCGCTGGTCCCCGGCCAGGACGCATATTATTGCTGCTGGGGGTTCTTCCCTATGGGGTTTGTAACGGGCAGCTTCGGATCACCGGAGAAGGAGGCGGAGGCGGTACCCGCACCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCAACCGGCTTCTTCTTTGCCGAATTGGATGCCCGTGCCCGTGCCCGTGGCGGCGGAGAACGGTGCGCATTCGACACCGGTGACGGCCAGGGTTACTCGGTCGGGGGCGGCTGCGGCAACAATGGTTGCGAGGGGGACAAACGGGACTGTGCCGAAGAAGAGGGGGAGGCCGAGGAAGTATCCTTTACAGTCGTGA 1020 0.6078 MNATRAEAERLLGIAEKLLQNRDLMGSREFAILAQETEPLLDGSDQILAIVDVLLAADKRVNNHPDWYAILQVDRRSDDLDLIKKQYRRLALLLHPDKSRFAYADHAFKLVADAWALLSDPLKKSVYDKDLSFFSRVDLSVPGWVQQEKLPVRRTGPGPNTRNSASARGEIHADENSRRRNSTFWTACPYCYRLYEYPRVYENCCLRCQNCDRSFHGVAVPSLPPLVPGQDAYYCCWGFFPMGFVTGSFGSPEKEAEAVPAPPPPPPPPPPPPPPQPASSLPNWMPVPVPVAAENGAHSTPVTARVTRSGAAAATMVARGTNGTVPKKRGRPRKYPLQS 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01143 339 SMART dnaj_3 65 123 IPR001623 -
Spst8g01143 339 MobiDBLite consensus disorder prediction 251 339 - -
Spst8g01143 339 SUPERFAMILY Chaperone J-domain 58 131 IPR036869 -
Spst8g01143 339 CDD DnaJ 66 120 IPR001623 -
Spst8g01143 339 ProSitePatterns Nt-dnaJ domain signature. 108 127 IPR018253 -
Spst8g01143 339 Gene3D DnaJ domain 55 138 IPR036869 -
Spst8g01143 339 Pfam DnaJ domain 66 128 IPR001623 -
Spst8g01143 339 MobiDBLite consensus disorder prediction 151 174 - -
Spst8g01143 339 MobiDBLite consensus disorder prediction 257 284 - -
Spst8g01143 339 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 290 - -
Spst8g01143 339 PRINTS DnaJ domain signature 87 102 IPR001623 -
Spst8g01143 339 PRINTS DnaJ domain signature 103 123 IPR001623 -
Spst8g01143 339 PRINTS DnaJ domain signature 68 86 IPR001623 -
Spst8g01143 339 ProSiteProfiles dnaJ domain profile. 66 131 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01143 Spst-Chr8 10143247 10144266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01143 2 337 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 49.577 1.28e-104 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01143 - - gmx:100816918 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01143 8 10143247 10144266 Spst8g01143 8 10143247 10144266 ECH
Spst8g01143 8 10143247 10144266 Spst9g01085 9 9654041 9654802 PCT