Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01142 ATGGGTGCTGCATTCGACCCATTCCAAACTCTCTCCGCACTGTTCCTCATCTTCACCACCATCCTTACTCTCCTCACCCCTTTCATCCTTGGCGATGACACTGCCACCACGTCACCACCGCCGGACCTCTTCGCGGACCACTACGTCAAGCCCTTCAAGTCCAACACCAACGTCCTCGTGGGCGCGTTGACCACCACCTTCTCCCTCACCCTCCTATTCCTCCTCTACATCAAGCACTGCAACGATGCCAGAGACTACAGTGCCTCCGTCACCGACTCCGACCCCTCGCGCGGGAGCAAAAACTCTGGCGTTAACCATGCCCTTCTGGAGTCGTTACCGGTTTTTCAGTTTGGGTCGTTGAAGGGGCAGCACAGTCTCGACTGCGCCGTTTGTCTCGCCGTATTCGAGGACTCCGAGGTTCTAAGGTTGTTGCCCAAGTGTAGGCACGCATTCCACGTGGAGTGCGTGGACGTGTGGCTCCACGCACACTCCACGTGTCCGCTCTGTCGTTACAAGGTTGAACCCGACGAGGAAGGCGCGAAGGCGAAATCTTCGGAGGAAGAATCGAACATACGGGACCGAAACGACGCCGCGTGGCGAGGAGAAAACGAGAACGCTGAAATGGCGTCGTTGGACAGTGCGGAACGCGGGTTGCAGCACCGTTTTGATGGGGTCCAGCAGCGGTGGAGCGATTTTGAGGGGCGTGAAGAGTTGCGATTGACTTCGGAAACGGTCACGTGGGAGGCACGTGGAAAGGGACTTAGAAGGAGTCATAGTAGTAGTGATGTTGTTGGTGAGGTCATGGAAAGGAGAGAGTAA 819 0.5665 MGAAFDPFQTLSALFLIFTTILTLLTPFILGDDTATTSPPPDLFADHYVKPFKSNTNVLVGALTTTFSLTLLFLLYIKHCNDARDYSASVTDSDPSRGSKNSGVNHALLESLPVFQFGSLKGQHSLDCAVCLAVFEDSEVLRLLPKCRHAFHVECVDVWLHAHSTCPLCRYKVEPDEEGAKAKSSEEESNIRDRNDAAWRGENENAEMASLDSAERGLQHRFDGVQQRWSDFEGREELRLTSETVTWEARGKGLRRSHSSSDVVGEVMERRE 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01142 272 MobiDBLite consensus disorder prediction 179 201 - -
Spst8g01142 272 Pfam Ring finger domain 127 170 IPR001841 -
Spst8g01142 272 MobiDBLite consensus disorder prediction 179 202 - -
Spst8g01142 272 CDD RING-H2_EL5-like 127 170 - -
Spst8g01142 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 176 IPR013083 -
Spst8g01142 272 MobiDBLite consensus disorder prediction 251 272 - -
Spst8g01142 272 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Spst8g01142 272 FunFam RING-H2 finger protein ATL43 104 177 - -
Spst8g01142 272 SUPERFAMILY RING/U-box 108 176 - -
Spst8g01142 272 SMART ring_2 128 169 IPR001841 -
Spst8g01142 272 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 41 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01142 Spst-Chr8 10119925 10122911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01142 34 208 C3H Transcription Factor Family AT2G20030 39.791 1.34e-37 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01142 K19041 - vun:114195049 335.88