Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01138 ATGAAAAATCAAAACAAGATTCCTTTCAGTGAAGAAGACGCAGCTTCTCTATTGGAGAGATACGATGCACAGACTGTTTTGACGTTGCTTCAGGAATTGTCGAATTATCCACATTTAAAGTTCAACTGGAGTGATTTGGTGGCCAAAACCTCAACGGGAATTTCTAACGCTAGAGAGTATCAGATGCTGTGGCGGCATTTGGCGTATGGTCACTCCATGGAAATTTTGGACCACGACGCTCAACCTTTGGAGGATGACAGTGACATAGAGTGTGAACGAGAAGCATTACCCCACTTAAACAGGGAGACTGCAACACAAGCTGCAGCATGTGTTCAGGTAATTGCTGCATCCTATAAAATGAGTGAATCCACTCCTACTAGTTCAATGATTCAAGCTCCATTACCTATAAATATTCCAACCTGTACTCTTACTGGTCAGGAAAGTTCAGAAGGTTCCTCCACTTCGAGTAGCCAACGTTCAGACATTATTTTTCCAGTAACAGTCAAAAGACAGACCTTACCAAATGTATTGGTTGGGGAAGGTACATCCCTAAAAAAGAAAAGAGAACCGTGGTCAGAACAAGAGGATATTCAATTAAGGGATGCAGTTCAGAGATGGGGTGAAGGTAATTGGGCAAATATGATCAAAAGAGATGACTTTCCTATTAAGAGAAGTACCTCACAATTATCTAAGAGATGGAGCACAATAAGGAGGAGGGATGCCAACATTAATTGA 735 0.415 MKNQNKIPFSEEDAASLLERYDAQTVLTLLQELSNYPHLKFNWSDLVAKTSTGISNAREYQMLWRHLAYGHSMEILDHDAQPLEDDSDIECEREALPHLNRETATQAAACVQVIAASYKMSESTPTSSMIQAPLPINIPTCTLTGQESSEGSSTSSSQRSDIIFPVTVKRQTLPNVLVGEGTSLKKKREPWSEQEDIQLRDAVQRWGEGNWANMIKRDDFPIKRSTSQLSKRWSTIRRRDANIN 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01138 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 185 241 IPR017930 -
Spst8g01138 244 Gene3D - 182 242 - -
Spst8g01138 244 SMART sant 187 239 IPR001005 -
Spst8g01138 244 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 2 244 - -
Spst8g01138 244 ProSiteProfiles Myb-like domain profile. 183 237 IPR001005 -
Spst8g01138 244 CDD SANT_TRF 190 238 - -
Spst8g01138 244 Pfam Myb-like DNA-binding domain 188 235 IPR001005 -
Spst8g01138 244 SUPERFAMILY Homeodomain-like 185 238 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01138 Spst-Chr8 10090958 10094735 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst8g01138 Myb_DNA-binding 1.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01138 - - gmx:100819057 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01138 8 10090958 10094735 Spst8g01138 8 10090958 10094735 ECH
Spst8g01138 8 10090958 10094735 Spst9g01096 9 9796807 9804349 PCT